Hb_008021_060

Information

Type -
Description -
Location Contig8021: 70083-74465
Sequence    

Annotation

kegg
ID rcu:RCOM_0859900
description Squalene monooxygenase, putative (EC:1.14.99.7)
nr
ID XP_002530610.1
description Squalene monooxygenase, putative [Ricinus communis]
swissprot
ID O48651
description Squalene monooxygenase OS=Panax ginseng PE=2 SV=1
trembl
ID B9SX91
description Squalene monooxygenase, putative OS=Ricinus communis GN=RCOM_0859900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description squalene monooxygenase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58864: 70192-74410 , PASA_asmbl_58865: 70167-74405 , PASA_asmbl_58866: 72108-72415
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008021_060 0.0 - - Squalene monooxygenase, putative [Ricinus communis]
2 Hb_001652_100 0.0423978376 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
3 Hb_007922_030 0.0488928226 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
4 Hb_000058_180 0.0645155063 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
5 Hb_008147_020 0.0651403601 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
6 Hb_132840_190 0.0692056045 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
7 Hb_007120_120 0.0788927161 - - protein binding protein, putative [Ricinus communis]
8 Hb_007221_020 0.0800823945 - - FAD-binding domain-containing family protein [Populus trichocarpa]
9 Hb_002704_060 0.0849084622 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
10 Hb_012035_010 0.0853033659 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
11 Hb_009663_020 0.0880164193 - - -
12 Hb_001642_020 0.0888729204 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
13 Hb_000538_090 0.0900631193 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
14 Hb_012675_040 0.0906902989 - - PREDICTED: uncharacterized protein LOC105647773 isoform X1 [Jatropha curcas]
15 Hb_002043_020 0.0916282048 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
16 Hb_000321_110 0.0919910212 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
17 Hb_000000_390 0.0929450406 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
18 Hb_016734_100 0.0932590768 - - -
19 Hb_006711_030 0.0946551018 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
20 Hb_167188_020 0.0963759164 - - PREDICTED: uncharacterized protein At1g05835 [Jatropha curcas]

Gene co-expression network

sample Hb_008021_060 Hb_008021_060 Hb_001652_100 Hb_001652_100 Hb_008021_060--Hb_001652_100 Hb_007922_030 Hb_007922_030 Hb_008021_060--Hb_007922_030 Hb_000058_180 Hb_000058_180 Hb_008021_060--Hb_000058_180 Hb_008147_020 Hb_008147_020 Hb_008021_060--Hb_008147_020 Hb_132840_190 Hb_132840_190 Hb_008021_060--Hb_132840_190 Hb_007120_120 Hb_007120_120 Hb_008021_060--Hb_007120_120 Hb_001652_100--Hb_007120_120 Hb_001652_100--Hb_007922_030 Hb_001652_100--Hb_000058_180 Hb_009663_020 Hb_009663_020 Hb_001652_100--Hb_009663_020 Hb_016734_100 Hb_016734_100 Hb_001652_100--Hb_016734_100 Hb_007221_020 Hb_007221_020 Hb_007922_030--Hb_007221_020 Hb_001021_120 Hb_001021_120 Hb_007922_030--Hb_001021_120 Hb_007922_030--Hb_000058_180 Hb_031321_020 Hb_031321_020 Hb_007922_030--Hb_031321_020 Hb_000538_090 Hb_000538_090 Hb_000058_180--Hb_000538_090 Hb_000058_180--Hb_008147_020 Hb_001642_020 Hb_001642_020 Hb_000058_180--Hb_001642_020 Hb_002043_020 Hb_002043_020 Hb_008147_020--Hb_002043_020 Hb_002078_330 Hb_002078_330 Hb_008147_020--Hb_002078_330 Hb_002704_060 Hb_002704_060 Hb_008147_020--Hb_002704_060 Hb_001206_110 Hb_001206_110 Hb_008147_020--Hb_001206_110 Hb_001031_140 Hb_001031_140 Hb_008147_020--Hb_001031_140 Hb_132840_190--Hb_007221_020 Hb_132840_190--Hb_007922_030 Hb_132840_190--Hb_001652_100 Hb_004453_160 Hb_004453_160 Hb_132840_190--Hb_004453_160 Hb_000089_170 Hb_000089_170 Hb_132840_190--Hb_000089_170 Hb_007120_120--Hb_009663_020 Hb_024071_030 Hb_024071_030 Hb_007120_120--Hb_024071_030 Hb_007120_120--Hb_016734_100 Hb_163566_010 Hb_163566_010 Hb_007120_120--Hb_163566_010 Hb_007120_120--Hb_001642_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0484763 0.311579 38.0496 24.2292 0.0352464 0.00883478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.493171 22.1991

CAGE analysis