Hb_001206_110

Information

Type -
Description -
Location Contig1206: 112049-113845
Sequence    

Annotation

kegg
ID pop:POPTR_0004s05360g
description POPTRDRAFT_855395; GDSL-motif lipase/hydrolase family protein
nr
ID XP_012091740.1
description PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
swissprot
ID Q9FJ45
description GDSL esterase/lipase At5g45910 OS=Arabidopsis thaliana GN=At5g45910 PE=2 SV=1
trembl
ID A0A067JE78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21539 PE=4 SV=1
Gene Ontology
ID GO:0016635
description gdsl esterase lipase at5g45910-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06415: 112051-114132
cDNA
(Sanger)
(ID:Location)		 015_H17.ab1: 112051-113151 , 024_B12.ab1: 112051-112923 , 034_J15.ab1: 112051-113191 , 035_L08.ab1: 112105-113279 , 052_J15.ab1: 112051-113188

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001206_110 0.0 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
2 Hb_001728_070 0.0287844468 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
3 Hb_000777_080 0.0306305607 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
4 Hb_088689_010 0.038788961 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
5 Hb_008173_160 0.0388291701 - - PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica]
6 Hb_007894_200 0.0403209198 - - ubiquitin-conjugating enzyme variant, putative [Ricinus communis]
7 Hb_002973_100 0.0405386187 transcription factor TF Family: GNAT PREDICTED: probable N-acetyltransferase HLS1 [Populus euphratica]
8 Hb_001141_180 0.0407195996 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
9 Hb_013394_070 0.0409655787 - - hypothetical protein POPTR_0013s12090g [Populus trichocarpa]
10 Hb_004735_030 0.0429492516 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
11 Hb_012807_040 0.0477267197 - - hypothetical protein POPTR_0009s01390g [Populus trichocarpa]
12 Hb_002043_020 0.0490576914 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
13 Hb_001031_140 0.0495866445 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
14 Hb_004724_090 0.0526255051 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
15 Hb_001253_050 0.0549108186 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
16 Hb_000160_020 0.0554139556 - - PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Jatropha curcas]
17 Hb_008147_020 0.0556381281 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
18 Hb_001789_220 0.0567686067 - - PREDICTED: BAHD acyltransferase DCR-like [Jatropha curcas]
19 Hb_000189_300 0.058692099 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_006117_030 0.0602554078 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001206_110 Hb_001206_110 Hb_001728_070 Hb_001728_070 Hb_001206_110--Hb_001728_070 Hb_000777_080 Hb_000777_080 Hb_001206_110--Hb_000777_080 Hb_088689_010 Hb_088689_010 Hb_001206_110--Hb_088689_010 Hb_008173_160 Hb_008173_160 Hb_001206_110--Hb_008173_160 Hb_007894_200 Hb_007894_200 Hb_001206_110--Hb_007894_200 Hb_002973_100 Hb_002973_100 Hb_001206_110--Hb_002973_100 Hb_001728_070--Hb_000777_080 Hb_001728_070--Hb_088689_010 Hb_001728_070--Hb_008173_160 Hb_001141_180 Hb_001141_180 Hb_001728_070--Hb_001141_180 Hb_001728_070--Hb_007894_200 Hb_013394_070 Hb_013394_070 Hb_000777_080--Hb_013394_070 Hb_004735_030 Hb_004735_030 Hb_000777_080--Hb_004735_030 Hb_000777_080--Hb_007894_200 Hb_000777_080--Hb_088689_010 Hb_000777_080--Hb_008173_160 Hb_088689_010--Hb_008173_160 Hb_088689_010--Hb_002973_100 Hb_012807_040 Hb_012807_040 Hb_088689_010--Hb_012807_040 Hb_088689_010--Hb_007894_200 Hb_000160_020 Hb_000160_020 Hb_088689_010--Hb_000160_020 Hb_008173_160--Hb_002973_100 Hb_008173_160--Hb_012807_040 Hb_008173_160--Hb_007894_200 Hb_008173_160--Hb_000160_020 Hb_007894_200--Hb_002973_100 Hb_007894_200--Hb_013394_070 Hb_002973_100--Hb_012807_040 Hb_002973_100--Hb_013394_070 Hb_002973_100--Hb_000160_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.356698 96.1315 47.478 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 73.9702

CAGE analysis