Hb_009663_020

Information

Type -
Description -
Location Contig9663: 23561-28010
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0009055
description blue copper protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63904: 27788-28245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009663_020 0.0 - - -
2 Hb_007120_120 0.0189763172 - - protein binding protein, putative [Ricinus communis]
3 Hb_024071_030 0.0353126277 - - hypothetical protein CICLE_v10025479mg [Citrus clementina]
4 Hb_163566_010 0.0520014485 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
5 Hb_016734_100 0.0530609082 - - -
6 Hb_001652_100 0.057324799 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
7 Hb_000321_110 0.0668773573 - - Uncharacterized protein TCM_041937 [Theobroma cacao]
8 Hb_000556_060 0.0674648408 - - hypothetical protein OsJ_28181 [Oryza sativa Japonica Group]
9 Hb_001642_020 0.074445719 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
10 Hb_001426_020 0.0748288484 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
11 Hb_000487_080 0.077821635 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
12 Hb_031022_030 0.0795262284 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7-like [Jatropha curcas]
13 Hb_009847_010 0.0797107841 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]
14 Hb_132840_190 0.0858634872 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
15 Hb_000058_180 0.0863782766 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
16 Hb_008021_060 0.0880164193 - - Squalene monooxygenase, putative [Ricinus communis]
17 Hb_007922_030 0.0887122329 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
18 Hb_006711_030 0.0898655489 - - PREDICTED: rho guanine nucleotide exchange factor 8-like [Jatropha curcas]
19 Hb_007221_020 0.0906598725 - - FAD-binding domain-containing family protein [Populus trichocarpa]
20 Hb_005833_010 0.0909123644 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_009663_020 Hb_009663_020 Hb_007120_120 Hb_007120_120 Hb_009663_020--Hb_007120_120 Hb_024071_030 Hb_024071_030 Hb_009663_020--Hb_024071_030 Hb_163566_010 Hb_163566_010 Hb_009663_020--Hb_163566_010 Hb_016734_100 Hb_016734_100 Hb_009663_020--Hb_016734_100 Hb_001652_100 Hb_001652_100 Hb_009663_020--Hb_001652_100 Hb_000321_110 Hb_000321_110 Hb_009663_020--Hb_000321_110 Hb_007120_120--Hb_024071_030 Hb_007120_120--Hb_016734_100 Hb_007120_120--Hb_001652_100 Hb_007120_120--Hb_163566_010 Hb_001642_020 Hb_001642_020 Hb_007120_120--Hb_001642_020 Hb_000556_060 Hb_000556_060 Hb_024071_030--Hb_000556_060 Hb_024071_030--Hb_163566_010 Hb_024071_030--Hb_000321_110 Hb_009847_010 Hb_009847_010 Hb_024071_030--Hb_009847_010 Hb_005833_010 Hb_005833_010 Hb_163566_010--Hb_005833_010 Hb_163566_010--Hb_016734_100 Hb_001426_020 Hb_001426_020 Hb_163566_010--Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_163566_010--Hb_000487_080 Hb_016734_100--Hb_001426_020 Hb_016734_100--Hb_000487_080 Hb_016734_100--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_016734_100--Hb_001031_140 Hb_008021_060 Hb_008021_060 Hb_001652_100--Hb_008021_060 Hb_007922_030 Hb_007922_030 Hb_001652_100--Hb_007922_030 Hb_000058_180 Hb_000058_180 Hb_001652_100--Hb_000058_180 Hb_001652_100--Hb_016734_100 Hb_000321_110--Hb_001652_100 Hb_000321_110--Hb_163566_010 Hb_000321_110--Hb_007120_120 Hb_000321_110--Hb_007922_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.30379 1.09286 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.829044

CAGE analysis