Hb_000058_180

Information

Type -
Description -
Location Contig58: 304821-311328
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19140g
description POPTRDRAFT_802216; hypothetical protein
nr
ID XP_012071608.1
description PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
swissprot
ID Q8H1Z0
description Protein ECERIFERUM 3 OS=Arabidopsis thaliana GN=CER3 PE=1 SV=1
trembl
ID A0A067KRN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04115 PE=4 SV=1
Gene Ontology
ID GO:0005886
description protein eceriferum 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49818: 308321-308881 , PASA_asmbl_49819: 304662-305141 , PASA_asmbl_49820: 304821-311325 , PASA_asmbl_49821: 304585-304818 , PASA_asmbl_49822: 305335-305607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000058_180 0.0 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
2 Hb_001652_100 0.055518444 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
3 Hb_007922_030 0.0624962905 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
4 Hb_000538_090 0.0633769436 transcription factor TF Family: NAC hypothetical protein RCOM_1603380 [Ricinus communis]
5 Hb_008147_020 0.0644435679 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
6 Hb_008021_060 0.0645155063 - - Squalene monooxygenase, putative [Ricinus communis]
7 Hb_001642_020 0.0772484317 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
8 Hb_007221_020 0.0782133596 - - FAD-binding domain-containing family protein [Populus trichocarpa]
9 Hb_031321_020 0.0805050445 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
10 Hb_016734_100 0.08185852 - - -
11 Hb_007120_120 0.0820260316 - - protein binding protein, putative [Ricinus communis]
12 Hb_002043_020 0.0825400465 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
13 Hb_132840_190 0.0830911528 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
14 Hb_005276_140 0.083228283 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002704_060 0.0833923202 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
16 Hb_143629_180 0.0836746689 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
17 Hb_002078_330 0.0844968182 - - lipid binding protein, putative [Ricinus communis]
18 Hb_012395_240 0.0854275566 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
19 Hb_009663_020 0.0863782766 - - -
20 Hb_000000_390 0.0882303086 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]

Gene co-expression network

sample Hb_000058_180 Hb_000058_180 Hb_001652_100 Hb_001652_100 Hb_000058_180--Hb_001652_100 Hb_007922_030 Hb_007922_030 Hb_000058_180--Hb_007922_030 Hb_000538_090 Hb_000538_090 Hb_000058_180--Hb_000538_090 Hb_008147_020 Hb_008147_020 Hb_000058_180--Hb_008147_020 Hb_008021_060 Hb_008021_060 Hb_000058_180--Hb_008021_060 Hb_001642_020 Hb_001642_020 Hb_000058_180--Hb_001642_020 Hb_001652_100--Hb_008021_060 Hb_007120_120 Hb_007120_120 Hb_001652_100--Hb_007120_120 Hb_001652_100--Hb_007922_030 Hb_009663_020 Hb_009663_020 Hb_001652_100--Hb_009663_020 Hb_016734_100 Hb_016734_100 Hb_001652_100--Hb_016734_100 Hb_007221_020 Hb_007221_020 Hb_007922_030--Hb_007221_020 Hb_007922_030--Hb_008021_060 Hb_001021_120 Hb_001021_120 Hb_007922_030--Hb_001021_120 Hb_031321_020 Hb_031321_020 Hb_007922_030--Hb_031321_020 Hb_000000_390 Hb_000000_390 Hb_000538_090--Hb_000000_390 Hb_002078_330 Hb_002078_330 Hb_000538_090--Hb_002078_330 Hb_012395_240 Hb_012395_240 Hb_000538_090--Hb_012395_240 Hb_000538_090--Hb_008147_020 Hb_143629_180 Hb_143629_180 Hb_000538_090--Hb_143629_180 Hb_002043_020 Hb_002043_020 Hb_008147_020--Hb_002043_020 Hb_008147_020--Hb_002078_330 Hb_002704_060 Hb_002704_060 Hb_008147_020--Hb_002704_060 Hb_001206_110 Hb_001206_110 Hb_008147_020--Hb_001206_110 Hb_001031_140 Hb_001031_140 Hb_008147_020--Hb_001031_140 Hb_008021_060--Hb_008147_020 Hb_132840_190 Hb_132840_190 Hb_008021_060--Hb_132840_190 Hb_008021_060--Hb_007120_120 Hb_001642_020--Hb_016734_100 Hb_001642_020--Hb_001031_140 Hb_001426_020 Hb_001426_020 Hb_001642_020--Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_001642_020--Hb_000487_080 Hb_001141_180 Hb_001141_180 Hb_001642_020--Hb_001141_180 Hb_001642_020--Hb_001652_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.3627 53.7914 39.0521 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0363794 0.0143131 0 0.159178 37.3379

CAGE analysis