Hb_017434_040

Information

Type -
Description -
Location Contig17434: 33250-34510
Sequence    

Annotation

kegg
ID rcu:RCOM_0241890
description oxidoreductase, putative
nr
ID XP_012086454.1
description PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
swissprot
ID Q9SZ83
description Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1
trembl
ID A0A067K0Q5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22552 PE=4 SV=1
Gene Ontology
ID GO:0016491
description uncharacterized oxidoreductase at4g09670-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16615: 33198-34047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017434_040 0.0 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
2 Hb_000608_270 0.0726384268 - - conserved hypothetical protein [Ricinus communis]
3 Hb_143629_180 0.0731724178 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
4 Hb_001571_100 0.0803093304 - - chlorophyll A-B binding family protein [Populus trichocarpa]
5 Hb_002028_020 0.0836395934 - - acyltransferase, putative [Ricinus communis]
6 Hb_000808_130 0.0851778031 - - 3-5 exonuclease, putative [Ricinus communis]
7 Hb_041433_010 0.0881146759 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
8 Hb_002078_330 0.0891978882 - - lipid binding protein, putative [Ricinus communis]
9 Hb_001343_030 0.0897866579 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
10 Hb_149644_030 0.0908931103 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
11 Hb_001534_060 0.0920241383 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
12 Hb_005345_020 0.0929317306 - - Root phototropism protein, putative [Ricinus communis]
13 Hb_009476_030 0.0933506157 - - fatty acid desaturase [Manihot esculenta]
14 Hb_001488_230 0.0933551476 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
15 Hb_002272_210 0.0934803774 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
16 Hb_003623_080 0.0947171673 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
17 Hb_004724_090 0.0953108068 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
18 Hb_002704_060 0.096698017 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
19 Hb_000557_070 0.0970082659 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
20 Hb_002743_010 0.0971056914 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_017434_040 Hb_017434_040 Hb_000608_270 Hb_000608_270 Hb_017434_040--Hb_000608_270 Hb_143629_180 Hb_143629_180 Hb_017434_040--Hb_143629_180 Hb_001571_100 Hb_001571_100 Hb_017434_040--Hb_001571_100 Hb_002028_020 Hb_002028_020 Hb_017434_040--Hb_002028_020 Hb_000808_130 Hb_000808_130 Hb_017434_040--Hb_000808_130 Hb_041433_010 Hb_041433_010 Hb_017434_040--Hb_041433_010 Hb_000608_270--Hb_041433_010 Hb_001975_120 Hb_001975_120 Hb_000608_270--Hb_001975_120 Hb_009476_030 Hb_009476_030 Hb_000608_270--Hb_009476_030 Hb_000069_440 Hb_000069_440 Hb_000608_270--Hb_000069_440 Hb_034235_010 Hb_034235_010 Hb_000608_270--Hb_034235_010 Hb_001266_010 Hb_001266_010 Hb_000608_270--Hb_001266_010 Hb_002078_330 Hb_002078_330 Hb_143629_180--Hb_002078_330 Hb_002043_020 Hb_002043_020 Hb_143629_180--Hb_002043_020 Hb_000538_090 Hb_000538_090 Hb_143629_180--Hb_000538_090 Hb_002704_060 Hb_002704_060 Hb_143629_180--Hb_002704_060 Hb_008147_020 Hb_008147_020 Hb_143629_180--Hb_008147_020 Hb_002743_010 Hb_002743_010 Hb_001571_100--Hb_002743_010 Hb_001571_100--Hb_002028_020 Hb_005345_020 Hb_005345_020 Hb_001571_100--Hb_005345_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_001571_100--Hb_041433_010 Hb_000557_070 Hb_000557_070 Hb_001571_100--Hb_000557_070 Hb_001488_230 Hb_001488_230 Hb_002028_020--Hb_001488_230 Hb_009588_010 Hb_009588_010 Hb_002028_020--Hb_009588_010 Hb_000418_130 Hb_000418_130 Hb_002028_020--Hb_000418_130 Hb_000042_280 Hb_000042_280 Hb_002028_020--Hb_000042_280 Hb_149644_030 Hb_149644_030 Hb_002028_020--Hb_149644_030 Hb_005000_110 Hb_005000_110 Hb_000808_130--Hb_005000_110 Hb_003120_020 Hb_003120_020 Hb_000808_130--Hb_003120_020 Hb_001343_030 Hb_001343_030 Hb_000808_130--Hb_001343_030 Hb_023344_090 Hb_023344_090 Hb_000808_130--Hb_023344_090 Hb_007597_030 Hb_007597_030 Hb_000808_130--Hb_007597_030 Hb_041433_010--Hb_005345_020 Hb_001789_220 Hb_001789_220 Hb_041433_010--Hb_001789_220 Hb_041433_010--Hb_009476_030 Hb_007681_010 Hb_007681_010 Hb_041433_010--Hb_007681_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.331247 10.2127 5.19303 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130008 0.136349 0.0632269 0.0683473 10.3373

CAGE analysis