Hb_023344_090

Information

Type -
Description -
Location Contig23344: 101314-103012
Sequence    

Annotation

kegg
ID rcu:RCOM_0542030
description Photosystem II reaction center W protein, putative
nr
ID XP_002526538.1
description Photosystem II reaction center W protein, putative [Ricinus communis]
swissprot
ID Q0JG75
description Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2
trembl
ID B9SKL9
description Photosystem II reaction center Psb28 protein OS=Ricinus communis GN=RCOM_0542030 PE=3 SV=1
Gene Ontology
ID GO:0009654
description photosystem ii reaction center psb28 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24526: 101392-103005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_090 0.0 - - Photosystem II reaction center W protein, putative [Ricinus communis]
2 Hb_001488_250 0.0764417353 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000128_040 0.0799913819 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
4 Hb_005000_110 0.0832433342 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
5 Hb_000808_130 0.0863527149 - - 3-5 exonuclease, putative [Ricinus communis]
6 Hb_001343_030 0.0875510126 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
7 Hb_000116_320 0.0900263007 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_001005_140 0.0958549186 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003120_020 0.0972296923 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
10 Hb_001014_240 0.0974710999 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
11 Hb_001675_090 0.1026482908 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
12 Hb_009476_030 0.1043919765 - - fatty acid desaturase [Manihot esculenta]
13 Hb_017434_040 0.1052639723 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
14 Hb_015044_010 0.1056793646 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
15 Hb_006267_040 0.1059498829 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
16 Hb_005345_020 0.1098395705 - - Root phototropism protein, putative [Ricinus communis]
17 Hb_004920_020 0.1111950505 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
18 Hb_000962_090 0.1113930565 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
19 Hb_000719_030 0.1115300903 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
20 Hb_000300_110 0.1118045449 - - hypothetical protein JCGZ_02651 [Jatropha curcas]

Gene co-expression network

sample Hb_023344_090 Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_023344_090--Hb_001488_250 Hb_000128_040 Hb_000128_040 Hb_023344_090--Hb_000128_040 Hb_005000_110 Hb_005000_110 Hb_023344_090--Hb_005000_110 Hb_000808_130 Hb_000808_130 Hb_023344_090--Hb_000808_130 Hb_001343_030 Hb_001343_030 Hb_023344_090--Hb_001343_030 Hb_000116_320 Hb_000116_320 Hb_023344_090--Hb_000116_320 Hb_001488_250--Hb_000128_040 Hb_001488_250--Hb_005000_110 Hb_001488_250--Hb_001343_030 Hb_000719_030 Hb_000719_030 Hb_001488_250--Hb_000719_030 Hb_146225_020 Hb_146225_020 Hb_001488_250--Hb_146225_020 Hb_001014_240 Hb_001014_240 Hb_000128_040--Hb_001014_240 Hb_015044_010 Hb_015044_010 Hb_000128_040--Hb_015044_010 Hb_101133_030 Hb_101133_030 Hb_000128_040--Hb_101133_030 Hb_000359_050 Hb_000359_050 Hb_000128_040--Hb_000359_050 Hb_006267_040 Hb_006267_040 Hb_000128_040--Hb_006267_040 Hb_005000_110--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_005000_110--Hb_007597_030 Hb_005000_110--Hb_000808_130 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_003120_020 Hb_003120_020 Hb_000808_130--Hb_003120_020 Hb_000808_130--Hb_001343_030 Hb_017434_040 Hb_017434_040 Hb_000808_130--Hb_017434_040 Hb_000808_130--Hb_007597_030 Hb_001343_030--Hb_000962_090 Hb_001975_120 Hb_001975_120 Hb_001343_030--Hb_001975_120 Hb_002272_210 Hb_002272_210 Hb_001343_030--Hb_002272_210 Hb_000530_040 Hb_000530_040 Hb_001343_030--Hb_000530_040 Hb_005211_080 Hb_005211_080 Hb_001343_030--Hb_005211_080 Hb_001343_030--Hb_000359_050 Hb_001005_140 Hb_001005_140 Hb_000116_320--Hb_001005_140 Hb_000116_320--Hb_003120_020 Hb_000116_320--Hb_000808_130 Hb_000915_210 Hb_000915_210 Hb_000116_320--Hb_000915_210 Hb_001675_090 Hb_001675_090 Hb_000116_320--Hb_001675_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.915056 35.309 10.74 0.0235614 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107654 0.677324 0.465982 1.27834 32.6188

CAGE analysis