Hb_000116_320

Information

Type -
Description -
Location Contig116: 269607-272638
Sequence    

Annotation

kegg
ID rcu:RCOM_0874960
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002521731.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q9SD02
description Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1
trembl
ID B9S6W2
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0874960 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 47

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04865: 272340-272515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000116_320 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_001005_140 0.0755736486 - - conserved hypothetical protein [Ricinus communis]
3 Hb_023344_090 0.0900263007 - - Photosystem II reaction center W protein, putative [Ricinus communis]
4 Hb_003120_020 0.0925965999 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
5 Hb_000808_130 0.1050237898 - - 3-5 exonuclease, putative [Ricinus communis]
6 Hb_000915_210 0.1139209871 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001675_090 0.1148239378 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
8 Hb_002042_090 0.1153012078 - - PREDICTED: root phototropism protein 3-like [Jatropha curcas]
9 Hb_001205_140 0.1155030858 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
10 Hb_000061_010 0.1179125363 - - conserved hypothetical protein [Ricinus communis]
11 Hb_017434_040 0.1190012424 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
12 Hb_003750_110 0.1201320722 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
13 Hb_006117_030 0.1202727085 - - conserved hypothetical protein [Ricinus communis]
14 Hb_014056_020 0.1212139445 - - zinc finger protein, putative [Ricinus communis]
15 Hb_000333_010 0.1214368117 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
16 Hb_009476_030 0.1217724452 - - fatty acid desaturase [Manihot esculenta]
17 Hb_005345_020 0.1217736329 - - Root phototropism protein, putative [Ricinus communis]
18 Hb_001343_030 0.1221565423 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
19 Hb_002743_010 0.1222079287 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000719_030 0.1230610783 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000116_320 Hb_000116_320 Hb_001005_140 Hb_001005_140 Hb_000116_320--Hb_001005_140 Hb_023344_090 Hb_023344_090 Hb_000116_320--Hb_023344_090 Hb_003120_020 Hb_003120_020 Hb_000116_320--Hb_003120_020 Hb_000808_130 Hb_000808_130 Hb_000116_320--Hb_000808_130 Hb_000915_210 Hb_000915_210 Hb_000116_320--Hb_000915_210 Hb_001675_090 Hb_001675_090 Hb_000116_320--Hb_001675_090 Hb_001005_140--Hb_023344_090 Hb_001005_140--Hb_003120_020 Hb_009476_030 Hb_009476_030 Hb_001005_140--Hb_009476_030 Hb_017434_040 Hb_017434_040 Hb_001005_140--Hb_017434_040 Hb_001005_140--Hb_000808_130 Hb_001488_250 Hb_001488_250 Hb_023344_090--Hb_001488_250 Hb_000128_040 Hb_000128_040 Hb_023344_090--Hb_000128_040 Hb_005000_110 Hb_005000_110 Hb_023344_090--Hb_005000_110 Hb_023344_090--Hb_000808_130 Hb_001343_030 Hb_001343_030 Hb_023344_090--Hb_001343_030 Hb_000049_100 Hb_000049_100 Hb_003120_020--Hb_000049_100 Hb_003120_020--Hb_000808_130 Hb_000881_070 Hb_000881_070 Hb_003120_020--Hb_000881_070 Hb_010326_020 Hb_010326_020 Hb_003120_020--Hb_010326_020 Hb_001534_060 Hb_001534_060 Hb_003120_020--Hb_001534_060 Hb_002375_030 Hb_002375_030 Hb_003120_020--Hb_002375_030 Hb_000808_130--Hb_005000_110 Hb_000808_130--Hb_001343_030 Hb_000808_130--Hb_017434_040 Hb_007597_030 Hb_007597_030 Hb_000808_130--Hb_007597_030 Hb_002743_010 Hb_002743_010 Hb_000915_210--Hb_002743_010 Hb_014056_020 Hb_014056_020 Hb_000915_210--Hb_014056_020 Hb_006117_030 Hb_006117_030 Hb_000915_210--Hb_006117_030 Hb_002965_170 Hb_002965_170 Hb_000915_210--Hb_002965_170 Hb_000731_150 Hb_000731_150 Hb_000915_210--Hb_000731_150 Hb_001571_100 Hb_001571_100 Hb_000915_210--Hb_001571_100 Hb_000719_030 Hb_000719_030 Hb_001675_090--Hb_000719_030 Hb_005345_020 Hb_005345_020 Hb_001675_090--Hb_005345_020 Hb_002818_110 Hb_002818_110 Hb_001675_090--Hb_002818_110 Hb_000210_030 Hb_000210_030 Hb_001675_090--Hb_000210_030 Hb_000061_010 Hb_000061_010 Hb_001675_090--Hb_000061_010 Hb_001675_090--Hb_009476_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130076 0.0658494 15.8484 5.2086 0.0203169 0.0091786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0953505 0.0562674 0.603812 0.283689 14.842

CAGE analysis