Hb_005000_110

Information

Type -
Description -
Location Contig5000: 93704-97250
Sequence    

Annotation

kegg
ID rcu:RCOM_1046750
description hypothetical protein
nr
ID XP_012076915.1
description PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07398 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45798: 93748-94665 , PASA_asmbl_45799: 95118-95481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005000_110 0.0 - - PREDICTED: uncharacterized protein LOC105637872 isoform X1 [Jatropha curcas]
2 Hb_001343_030 0.0697772039 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
3 Hb_007597_030 0.0718106496 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000808_130 0.0728672027 - - 3-5 exonuclease, putative [Ricinus communis]
5 Hb_000962_090 0.0798920969 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
6 Hb_023344_090 0.0832433342 - - Photosystem II reaction center W protein, putative [Ricinus communis]
7 Hb_001488_250 0.0900147079 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004920_020 0.0902778793 - - hypothetical protein POPTR_0014s11700g [Populus trichocarpa]
9 Hb_005211_080 0.0917334038 - - hypothetical protein POPTR_0010s13740g [Populus trichocarpa]
10 Hb_110266_010 0.0945525319 - - PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like [Jatropha curcas]
11 Hb_004306_090 0.0960455658 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
12 Hb_000116_220 0.0979792032 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002272_210 0.098849841 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
14 Hb_001014_240 0.1001549513 - - PREDICTED: protein NRT1/ PTR FAMILY 6.1 [Jatropha curcas]
15 Hb_000128_040 0.1004157547 - - PREDICTED: uncharacterized protein LOC105641228 isoform X1 [Jatropha curcas]
16 Hb_001159_070 0.1004788546 - - DNA photolyase, putative [Ricinus communis]
17 Hb_017434_040 0.1006640911 - - PREDICTED: uncharacterized oxidoreductase At4g09670-like [Jatropha curcas]
18 Hb_000711_030 0.1011157141 - - hypothetical protein POPTR_0019s02860g [Populus trichocarpa]
19 Hb_000359_050 0.1034341322 - - Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]
20 Hb_003120_020 0.1045306625 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]

Gene co-expression network

sample Hb_005000_110 Hb_005000_110 Hb_001343_030 Hb_001343_030 Hb_005000_110--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_005000_110--Hb_007597_030 Hb_000808_130 Hb_000808_130 Hb_005000_110--Hb_000808_130 Hb_000962_090 Hb_000962_090 Hb_005000_110--Hb_000962_090 Hb_023344_090 Hb_023344_090 Hb_005000_110--Hb_023344_090 Hb_001488_250 Hb_001488_250 Hb_005000_110--Hb_001488_250 Hb_001343_030--Hb_000962_090 Hb_001975_120 Hb_001975_120 Hb_001343_030--Hb_001975_120 Hb_002272_210 Hb_002272_210 Hb_001343_030--Hb_002272_210 Hb_000530_040 Hb_000530_040 Hb_001343_030--Hb_000530_040 Hb_005211_080 Hb_005211_080 Hb_001343_030--Hb_005211_080 Hb_000359_050 Hb_000359_050 Hb_001343_030--Hb_000359_050 Hb_007597_030--Hb_002272_210 Hb_007597_030--Hb_001343_030 Hb_000460_040 Hb_000460_040 Hb_007597_030--Hb_000460_040 Hb_003623_080 Hb_003623_080 Hb_007597_030--Hb_003623_080 Hb_007597_030--Hb_005211_080 Hb_003120_020 Hb_003120_020 Hb_000808_130--Hb_003120_020 Hb_000808_130--Hb_001343_030 Hb_017434_040 Hb_017434_040 Hb_000808_130--Hb_017434_040 Hb_000808_130--Hb_023344_090 Hb_000808_130--Hb_007597_030 Hb_000962_090--Hb_005211_080 Hb_000962_090--Hb_000359_050 Hb_001014_240 Hb_001014_240 Hb_000962_090--Hb_001014_240 Hb_005329_010 Hb_005329_010 Hb_000962_090--Hb_005329_010 Hb_001006_150 Hb_001006_150 Hb_000962_090--Hb_001006_150 Hb_023344_090--Hb_001488_250 Hb_000128_040 Hb_000128_040 Hb_023344_090--Hb_000128_040 Hb_023344_090--Hb_001343_030 Hb_000116_320 Hb_000116_320 Hb_023344_090--Hb_000116_320 Hb_001488_250--Hb_000128_040 Hb_001488_250--Hb_001343_030 Hb_000719_030 Hb_000719_030 Hb_001488_250--Hb_000719_030 Hb_146225_020 Hb_146225_020 Hb_001488_250--Hb_146225_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0632666 1.49008 20.7543 7.36799 0.0189169 0.0741593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.310616 0.541179 0.0993549 0.611099 20.596

CAGE analysis