Hb_002001_030

Information

Type -
Description -
Location Contig2001: 42978-49905
Sequence    

Annotation

kegg
ID rcu:RCOM_1643620
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative (EC:3.6.3.6)
nr
ID KHG28536.1
description Plasma membrane ATPase 4 [Gossypium arboreum]
swissprot
ID Q03194
description Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1
trembl
ID A0A0B0PYJ1
description Plasma membrane ATPase 4 OS=Gossypium arboreum GN=F383_00331 PE=4 SV=1
Gene Ontology
ID GO:0016021
description plasma membrane atpase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20269: 43072-49873 , PASA_asmbl_20270: 48509-49805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002001_030 0.0 - - Plasma membrane ATPase 4 [Gossypium arboreum]
2 Hb_005018_010 0.0772287691 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
3 Hb_001491_070 0.0793572356 - - PREDICTED: probable beta-1,3-galactosyltransferase 17 isoform X1 [Jatropha curcas]
4 Hb_041139_010 0.0941423962 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
5 Hb_172426_070 0.0964254049 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
6 Hb_000621_030 0.0975222682 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
7 Hb_001384_040 0.1043406681 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
8 Hb_003163_010 0.1070897657 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
9 Hb_000941_110 0.1117587069 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_010264_010 0.1150643695 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
11 Hb_113379_010 0.1181797145 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
12 Hb_001104_220 0.1191371449 - - PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
13 Hb_000665_210 0.1197523526 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
14 Hb_131876_010 0.1205359879 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
15 Hb_000984_160 0.1216465519 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
16 Hb_011618_010 0.1233366244 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
17 Hb_006075_030 0.1235579116 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
18 Hb_162174_010 0.1244245759 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
19 Hb_000816_240 0.1247104404 - - PREDICTED: phosphoglucan phosphatase LSF2, chloroplastic [Jatropha curcas]
20 Hb_000977_020 0.1255543197 - - beta-hexosaminidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002001_030 Hb_002001_030 Hb_005018_010 Hb_005018_010 Hb_002001_030--Hb_005018_010 Hb_001491_070 Hb_001491_070 Hb_002001_030--Hb_001491_070 Hb_041139_010 Hb_041139_010 Hb_002001_030--Hb_041139_010 Hb_172426_070 Hb_172426_070 Hb_002001_030--Hb_172426_070 Hb_000621_030 Hb_000621_030 Hb_002001_030--Hb_000621_030 Hb_001384_040 Hb_001384_040 Hb_002001_030--Hb_001384_040 Hb_005018_010--Hb_001491_070 Hb_003163_010 Hb_003163_010 Hb_005018_010--Hb_003163_010 Hb_001516_010 Hb_001516_010 Hb_005018_010--Hb_001516_010 Hb_000424_130 Hb_000424_130 Hb_005018_010--Hb_000424_130 Hb_002835_310 Hb_002835_310 Hb_005018_010--Hb_002835_310 Hb_001491_070--Hb_172426_070 Hb_001491_070--Hb_003163_010 Hb_001491_070--Hb_000424_130 Hb_000139_360 Hb_000139_360 Hb_001491_070--Hb_000139_360 Hb_008253_050 Hb_008253_050 Hb_041139_010--Hb_008253_050 Hb_011618_010 Hb_011618_010 Hb_041139_010--Hb_011618_010 Hb_008441_010 Hb_008441_010 Hb_041139_010--Hb_008441_010 Hb_001894_100 Hb_001894_100 Hb_041139_010--Hb_001894_100 Hb_041139_010--Hb_172426_070 Hb_172426_070--Hb_003163_010 Hb_006831_090 Hb_006831_090 Hb_172426_070--Hb_006831_090 Hb_002600_170 Hb_002600_170 Hb_172426_070--Hb_002600_170 Hb_004032_280 Hb_004032_280 Hb_172426_070--Hb_004032_280 Hb_008536_020 Hb_008536_020 Hb_172426_070--Hb_008536_020 Hb_004881_070 Hb_004881_070 Hb_000621_030--Hb_004881_070 Hb_162174_010 Hb_162174_010 Hb_000621_030--Hb_162174_010 Hb_010264_010 Hb_010264_010 Hb_000621_030--Hb_010264_010 Hb_004374_160 Hb_004374_160 Hb_000621_030--Hb_004374_160 Hb_004116_050 Hb_004116_050 Hb_000621_030--Hb_004116_050 Hb_113379_010 Hb_113379_010 Hb_001384_040--Hb_113379_010 Hb_001384_040--Hb_011618_010 Hb_002740_060 Hb_002740_060 Hb_001384_040--Hb_002740_060 Hb_001384_040--Hb_008253_050 Hb_001384_040--Hb_041139_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0169905 0.836113 20.7407 24.7102 0 0.0346429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0542234 0.0258549 6.25408 37.046

CAGE analysis