Hb_000621_030

Information

Type -
Description -
Location Contig621: 26270-35688
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09840g
description POPTRDRAFT_198166; hypothetical protein
nr
ID XP_012077983.1
description PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KA10
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12988 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51507: 32843-35475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000621_030 0.0 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
2 Hb_002001_030 0.0975222682 - - Plasma membrane ATPase 4 [Gossypium arboreum]
3 Hb_004881_070 0.1057779554 - - ATP binding protein, putative [Ricinus communis]
4 Hb_162174_010 0.109038397 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
5 Hb_010264_010 0.115009585 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
6 Hb_004374_160 0.1173043768 transcription factor TF Family: bHLH hypothetical protein JCGZ_20587 [Jatropha curcas]
7 Hb_004116_050 0.1188420241 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
8 Hb_039435_010 0.1245636672 - - hypothetical protein SORBIDRAFT_10g025530 [Sorghum bicolor]
9 Hb_006142_050 0.1268984871 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
10 Hb_000140_500 0.1300485995 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_005018_010 0.1328474324 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
12 Hb_000416_090 0.1331617433 - - Aquaporin NIP1.1, putative [Ricinus communis]
13 Hb_007101_140 0.1339279517 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
14 Hb_001488_350 0.1346277306 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001278_090 0.134982679 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
16 Hb_017043_040 0.138680476 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
17 Hb_000181_220 0.1389297419 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
18 Hb_000017_140 0.1438318063 - - polygalacturonase, putative [Ricinus communis]
19 Hb_000941_110 0.1452097566 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
20 Hb_074197_030 0.1472250478 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000621_030 Hb_000621_030 Hb_002001_030 Hb_002001_030 Hb_000621_030--Hb_002001_030 Hb_004881_070 Hb_004881_070 Hb_000621_030--Hb_004881_070 Hb_162174_010 Hb_162174_010 Hb_000621_030--Hb_162174_010 Hb_010264_010 Hb_010264_010 Hb_000621_030--Hb_010264_010 Hb_004374_160 Hb_004374_160 Hb_000621_030--Hb_004374_160 Hb_004116_050 Hb_004116_050 Hb_000621_030--Hb_004116_050 Hb_005018_010 Hb_005018_010 Hb_002001_030--Hb_005018_010 Hb_001491_070 Hb_001491_070 Hb_002001_030--Hb_001491_070 Hb_041139_010 Hb_041139_010 Hb_002001_030--Hb_041139_010 Hb_172426_070 Hb_172426_070 Hb_002001_030--Hb_172426_070 Hb_001384_040 Hb_001384_040 Hb_002001_030--Hb_001384_040 Hb_004881_070--Hb_162174_010 Hb_004881_070--Hb_004374_160 Hb_001541_130 Hb_001541_130 Hb_004881_070--Hb_001541_130 Hb_001516_010 Hb_001516_010 Hb_004881_070--Hb_001516_010 Hb_000816_240 Hb_000816_240 Hb_004881_070--Hb_000816_240 Hb_017043_040 Hb_017043_040 Hb_162174_010--Hb_017043_040 Hb_012655_010 Hb_012655_010 Hb_162174_010--Hb_012655_010 Hb_005731_010 Hb_005731_010 Hb_162174_010--Hb_005731_010 Hb_162174_010--Hb_005018_010 Hb_032143_010 Hb_032143_010 Hb_010264_010--Hb_032143_010 Hb_000017_140 Hb_000017_140 Hb_010264_010--Hb_000017_140 Hb_001269_660 Hb_001269_660 Hb_010264_010--Hb_001269_660 Hb_000265_030 Hb_000265_030 Hb_010264_010--Hb_000265_030 Hb_000665_210 Hb_000665_210 Hb_010264_010--Hb_000665_210 Hb_007101_140 Hb_007101_140 Hb_010264_010--Hb_007101_140 Hb_001488_350 Hb_001488_350 Hb_004374_160--Hb_001488_350 Hb_039435_010 Hb_039435_010 Hb_004374_160--Hb_039435_010 Hb_002817_050 Hb_002817_050 Hb_004374_160--Hb_002817_050 Hb_005493_010 Hb_005493_010 Hb_004374_160--Hb_005493_010 Hb_001405_040 Hb_001405_040 Hb_004116_050--Hb_001405_040 Hb_067558_010 Hb_067558_010 Hb_004116_050--Hb_067558_010 Hb_000416_090 Hb_000416_090 Hb_004116_050--Hb_000416_090 Hb_001244_070 Hb_001244_070 Hb_004116_050--Hb_001244_070 Hb_004855_080 Hb_004855_080 Hb_004116_050--Hb_004855_080 Hb_005181_190 Hb_005181_190 Hb_004116_050--Hb_005181_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.117364 2.97228 3.4887 0.0178593 0.0202985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.102809 0.0635497 1.38813 4.73549

CAGE analysis