Hb_032143_010

Information

Type -
Description -
Location Contig32143: 1411-2180
Sequence    

Annotation

kegg
ID rcu:RCOM_0964340
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_002517775.1
description cinnamoyl-CoA reductase, putative [Ricinus communis]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID B9RVK6
description Cinnamoyl-CoA reductase, putative OS=Ricinus communis GN=RCOM_0964340 PE=4 SV=1
Gene Ontology
ID GO:0003854
description tetraketide alpha-pyrone reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032143_010 0.0 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
2 Hb_010264_010 0.0764032031 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
3 Hb_000265_030 0.0874088079 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
4 Hb_001104_220 0.1000897855 - - PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
5 Hb_005622_040 0.1061841315 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
6 Hb_006142_050 0.1097963959 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
7 Hb_181463_020 0.1193513 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
8 Hb_000237_120 0.1199882354 - - PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
9 Hb_000665_210 0.1212446856 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
10 Hb_001269_660 0.1242485602 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2 [Jatropha curcas]
11 Hb_000017_140 0.1282743815 - - polygalacturonase, putative [Ricinus communis]
12 Hb_002740_060 0.1295130998 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
13 Hb_002245_060 0.131065324 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
14 Hb_007101_140 0.1375374186 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
15 Hb_097783_030 0.1390229513 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
16 Hb_004162_140 0.139680289 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
17 Hb_082550_010 0.1398173378 - - hypothetical protein CISIN_1g0081081mg, partial [Citrus sinensis]
18 Hb_000784_060 0.1405573315 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002001_030 0.1415043274 - - Plasma membrane ATPase 4 [Gossypium arboreum]
20 Hb_001277_010 0.1431742931 - - unknown [Populus trichocarpa]

Gene co-expression network

sample Hb_032143_010 Hb_032143_010 Hb_010264_010 Hb_010264_010 Hb_032143_010--Hb_010264_010 Hb_000265_030 Hb_000265_030 Hb_032143_010--Hb_000265_030 Hb_001104_220 Hb_001104_220 Hb_032143_010--Hb_001104_220 Hb_005622_040 Hb_005622_040 Hb_032143_010--Hb_005622_040 Hb_006142_050 Hb_006142_050 Hb_032143_010--Hb_006142_050 Hb_181463_020 Hb_181463_020 Hb_032143_010--Hb_181463_020 Hb_000017_140 Hb_000017_140 Hb_010264_010--Hb_000017_140 Hb_001269_660 Hb_001269_660 Hb_010264_010--Hb_001269_660 Hb_010264_010--Hb_000265_030 Hb_000665_210 Hb_000665_210 Hb_010264_010--Hb_000665_210 Hb_007101_140 Hb_007101_140 Hb_010264_010--Hb_007101_140 Hb_002740_060 Hb_002740_060 Hb_000265_030--Hb_002740_060 Hb_000265_030--Hb_005622_040 Hb_002245_060 Hb_002245_060 Hb_000265_030--Hb_002245_060 Hb_005539_150 Hb_005539_150 Hb_000265_030--Hb_005539_150 Hb_001104_220--Hb_005622_040 Hb_001277_010 Hb_001277_010 Hb_001104_220--Hb_001277_010 Hb_008253_050 Hb_008253_050 Hb_001104_220--Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_001104_220--Hb_041139_010 Hb_008441_010 Hb_008441_010 Hb_001104_220--Hb_008441_010 Hb_005622_040--Hb_002740_060 Hb_005622_040--Hb_008253_050 Hb_097783_030 Hb_097783_030 Hb_005622_040--Hb_097783_030 Hb_011501_020 Hb_011501_020 Hb_005622_040--Hb_011501_020 Hb_000237_120 Hb_000237_120 Hb_006142_050--Hb_000237_120 Hb_006142_050--Hb_007101_140 Hb_006142_050--Hb_010264_010 Hb_000621_030 Hb_000621_030 Hb_006142_050--Hb_000621_030 Hb_004162_140 Hb_004162_140 Hb_006142_050--Hb_004162_140 Hb_181463_020--Hb_000237_120 Hb_000054_130 Hb_000054_130 Hb_181463_020--Hb_000054_130 Hb_001109_170 Hb_001109_170 Hb_181463_020--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_181463_020--Hb_001622_020 Hb_167211_010 Hb_167211_010 Hb_181463_020--Hb_167211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.443464 4.42923 9.94206 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.72789 14.94

CAGE analysis