Hb_005622_040

Information

Type -
Description -
Location Contig5622: 42428-44001
Sequence    

Annotation

kegg
ID rcu:RCOM_0899030
description KOM, putative (EC:3.4.21.105)
nr
ID XP_012073204.1
description PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
swissprot
ID Q6GMF8
description Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
trembl
ID E6NUB7
description JHL06P13.7 protein OS=Jatropha curcas GN=JHL06P13.7 PE=4 SV=1
Gene Ontology
ID GO:0016021
description inactive rhomboid protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005622_040 0.0 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
2 Hb_001104_220 0.069178724 - - PREDICTED: uncharacterized protein LOC105629453 [Jatropha curcas]
3 Hb_002740_060 0.086689482 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
4 Hb_000265_030 0.0920103044 - - PREDICTED: subtilisin-like protease SBT5.3 [Jatropha curcas]
5 Hb_008253_050 0.0976862165 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
6 Hb_097783_030 0.0991796757 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
7 Hb_011501_020 0.1050263412 - - PREDICTED: uncharacterized protein LOC105648929 [Jatropha curcas]
8 Hb_032143_010 0.1061841315 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
9 Hb_005155_030 0.1158995814 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
10 Hb_004896_030 0.1192963433 - - hypothetical protein VITISV_007475 [Vitis vinifera]
11 Hb_005539_150 0.1194732248 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Jatropha curcas]
12 Hb_128750_010 0.1275962666 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
13 Hb_002245_060 0.1326254878 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
14 Hb_041139_010 0.133352242 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
15 Hb_000223_090 0.1350351558 - - Blue copper protein precursor, putative [Ricinus communis]
16 Hb_029386_010 0.1357442516 - - RALF-LIKE 27 family protein [Populus trichocarpa]
17 Hb_113379_010 0.1371807358 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
18 Hb_001384_040 0.1389948925 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
19 Hb_025623_010 0.1397211428 - - -
20 Hb_102761_010 0.1410144648 - - hypothetical protein JCGZ_21614 [Jatropha curcas]

Gene co-expression network

sample Hb_005622_040 Hb_005622_040 Hb_001104_220 Hb_001104_220 Hb_005622_040--Hb_001104_220 Hb_002740_060 Hb_002740_060 Hb_005622_040--Hb_002740_060 Hb_000265_030 Hb_000265_030 Hb_005622_040--Hb_000265_030 Hb_008253_050 Hb_008253_050 Hb_005622_040--Hb_008253_050 Hb_097783_030 Hb_097783_030 Hb_005622_040--Hb_097783_030 Hb_011501_020 Hb_011501_020 Hb_005622_040--Hb_011501_020 Hb_001277_010 Hb_001277_010 Hb_001104_220--Hb_001277_010 Hb_001104_220--Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_001104_220--Hb_041139_010 Hb_032143_010 Hb_032143_010 Hb_001104_220--Hb_032143_010 Hb_008441_010 Hb_008441_010 Hb_001104_220--Hb_008441_010 Hb_004896_030 Hb_004896_030 Hb_002740_060--Hb_004896_030 Hb_002740_060--Hb_000265_030 Hb_113379_010 Hb_113379_010 Hb_002740_060--Hb_113379_010 Hb_001384_040 Hb_001384_040 Hb_002740_060--Hb_001384_040 Hb_000627_110 Hb_000627_110 Hb_002740_060--Hb_000627_110 Hb_000265_030--Hb_032143_010 Hb_002245_060 Hb_002245_060 Hb_000265_030--Hb_002245_060 Hb_010264_010 Hb_010264_010 Hb_000265_030--Hb_010264_010 Hb_005539_150 Hb_005539_150 Hb_000265_030--Hb_005539_150 Hb_008253_050--Hb_041139_010 Hb_011618_010 Hb_011618_010 Hb_008253_050--Hb_011618_010 Hb_001894_100 Hb_001894_100 Hb_008253_050--Hb_001894_100 Hb_005348_050 Hb_005348_050 Hb_008253_050--Hb_005348_050 Hb_000223_090 Hb_000223_090 Hb_008253_050--Hb_000223_090 Hb_008253_050--Hb_005539_150 Hb_005155_030 Hb_005155_030 Hb_097783_030--Hb_005155_030 Hb_000907_130 Hb_000907_130 Hb_097783_030--Hb_000907_130 Hb_003030_050 Hb_003030_050 Hb_097783_030--Hb_003030_050 Hb_002835_050 Hb_002835_050 Hb_097783_030--Hb_002835_050 Hb_097783_030--Hb_002740_060 Hb_025623_010 Hb_025623_010 Hb_011501_020--Hb_025623_010 Hb_000343_090 Hb_000343_090 Hb_011501_020--Hb_000343_090 Hb_000866_400 Hb_000866_400 Hb_011501_020--Hb_000866_400 Hb_011501_020--Hb_002245_060 Hb_121624_010 Hb_121624_010 Hb_011501_020--Hb_121624_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.024089 0.056485 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0221177 0.109369

CAGE analysis