Hb_002835_050

Information

Type -
Description -
Location Contig2835: 43666-44010
Sequence    

Annotation

kegg
ID rcu:RCOM_1508420
description hypothetical protein
nr
ID XP_012079964.1
description PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
swissprot
ID Q6ZI50
description High-affinity nitrate transporter-activating protein 2.1 OS=Oryza sativa subsp. japonica GN=NAR2.1 PE=1 SV=1
trembl
ID A0A067K4F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11393 PE=4 SV=1
Gene Ontology
ID GO:0005737
description high-affinity nitrate transporter -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002835_050 0.0 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
2 Hb_000907_130 0.0282172681 - - -
3 Hb_005155_030 0.0544382888 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
4 Hb_003030_050 0.082045533 - - -
5 Hb_097783_030 0.0824939858 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
6 Hb_012539_080 0.0863399551 - - Polyprotein, putative [Solanum demissum]
7 Hb_004392_030 0.1030372842 - - oxidoreductase family protein [Populus trichocarpa]
8 Hb_043935_010 0.1070770641 - - Receptor protein kinase-like protein [Medicago truncatula]
9 Hb_114893_010 0.1143393099 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
10 Hb_113379_010 0.1202087038 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
11 Hb_010381_080 0.120430118 - - cytochrome P450, putative [Ricinus communis]
12 Hb_002740_060 0.1225591488 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
13 Hb_039435_020 0.127023639 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
14 Hb_004896_030 0.1313043942 - - hypothetical protein VITISV_007475 [Vitis vinifera]
15 Hb_002122_070 0.1344593078 - - unnamed protein product [Vitis vinifera]
16 Hb_006053_020 0.137126076 - - CAP [Theobroma cacao]
17 Hb_006147_020 0.1374035976 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004242_200 0.1411322201 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
19 Hb_027654_010 0.1447862979 - - Isoamyl acetate-hydrolyzing esterase, putative [Ricinus communis]
20 Hb_001384_040 0.1456382662 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]

Gene co-expression network

sample Hb_002835_050 Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_002835_050--Hb_000907_130 Hb_005155_030 Hb_005155_030 Hb_002835_050--Hb_005155_030 Hb_003030_050 Hb_003030_050 Hb_002835_050--Hb_003030_050 Hb_097783_030 Hb_097783_030 Hb_002835_050--Hb_097783_030 Hb_012539_080 Hb_012539_080 Hb_002835_050--Hb_012539_080 Hb_004392_030 Hb_004392_030 Hb_002835_050--Hb_004392_030 Hb_000907_130--Hb_005155_030 Hb_000907_130--Hb_097783_030 Hb_000907_130--Hb_003030_050 Hb_000907_130--Hb_012539_080 Hb_043935_010 Hb_043935_010 Hb_000907_130--Hb_043935_010 Hb_005155_030--Hb_097783_030 Hb_005155_030--Hb_003030_050 Hb_113379_010 Hb_113379_010 Hb_005155_030--Hb_113379_010 Hb_002740_060 Hb_002740_060 Hb_005155_030--Hb_002740_060 Hb_003030_050--Hb_097783_030 Hb_110737_010 Hb_110737_010 Hb_003030_050--Hb_110737_010 Hb_001369_270 Hb_001369_270 Hb_003030_050--Hb_001369_270 Hb_005622_040 Hb_005622_040 Hb_097783_030--Hb_005622_040 Hb_097783_030--Hb_002740_060 Hb_012539_080--Hb_004392_030 Hb_012539_080--Hb_043935_010 Hb_006147_020 Hb_006147_020 Hb_012539_080--Hb_006147_020 Hb_012539_080--Hb_113379_010 Hb_004392_030--Hb_006147_020 Hb_004392_030--Hb_043935_010 Hb_010381_080 Hb_010381_080 Hb_004392_030--Hb_010381_080 Hb_015817_010 Hb_015817_010 Hb_004392_030--Hb_015817_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.296581 0.239483 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.283441 1.05489

CAGE analysis