Hb_003030_050

Information

Type -
Description -
Location Contig3030: 71079-83863
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31967: 51650-88286 , PASA_asmbl_31968: 51668-85710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003030_050 0.0 - - -
2 Hb_097783_030 0.0818871991 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
3 Hb_002835_050 0.082045533 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
4 Hb_000907_130 0.0876226075 - - -
5 Hb_005155_030 0.0915494613 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_110737_010 0.1002759366 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
7 Hb_001369_270 0.1372143397 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_068804_030 0.137738758 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
9 Hb_001109_170 0.1469378239 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
10 Hb_016835_020 0.1494858985 - - unnamed protein product [Coffea canephora]
11 Hb_004487_060 0.1613746746 - - cytochrome P450, putative [Ricinus communis]
12 Hb_039435_020 0.1626821133 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
13 Hb_012539_080 0.16440711 - - Polyprotein, putative [Solanum demissum]
14 Hb_006789_020 0.1648876495 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
15 Hb_002740_060 0.1673128161 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
16 Hb_003462_170 0.1713949644 - - unnamed protein product [Vitis vinifera]
17 Hb_114893_010 0.1718002035 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
18 Hb_004896_030 0.1732691101 - - hypothetical protein VITISV_007475 [Vitis vinifera]
19 Hb_005843_060 0.1733676647 - - PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X3 [Nelumbo nucifera]
20 Hb_002122_070 0.173655823 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_003030_050 Hb_003030_050 Hb_097783_030 Hb_097783_030 Hb_003030_050--Hb_097783_030 Hb_002835_050 Hb_002835_050 Hb_003030_050--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_003030_050--Hb_000907_130 Hb_005155_030 Hb_005155_030 Hb_003030_050--Hb_005155_030 Hb_110737_010 Hb_110737_010 Hb_003030_050--Hb_110737_010 Hb_001369_270 Hb_001369_270 Hb_003030_050--Hb_001369_270 Hb_097783_030--Hb_005155_030 Hb_097783_030--Hb_000907_130 Hb_097783_030--Hb_002835_050 Hb_005622_040 Hb_005622_040 Hb_097783_030--Hb_005622_040 Hb_002740_060 Hb_002740_060 Hb_097783_030--Hb_002740_060 Hb_002835_050--Hb_000907_130 Hb_002835_050--Hb_005155_030 Hb_012539_080 Hb_012539_080 Hb_002835_050--Hb_012539_080 Hb_004392_030 Hb_004392_030 Hb_002835_050--Hb_004392_030 Hb_000907_130--Hb_005155_030 Hb_000907_130--Hb_012539_080 Hb_043935_010 Hb_043935_010 Hb_000907_130--Hb_043935_010 Hb_113379_010 Hb_113379_010 Hb_005155_030--Hb_113379_010 Hb_005155_030--Hb_002740_060 Hb_001109_170 Hb_001109_170 Hb_110737_010--Hb_001109_170 Hb_000567_150 Hb_000567_150 Hb_110737_010--Hb_000567_150 Hb_110737_010--Hb_001369_270 Hb_004487_060 Hb_004487_060 Hb_110737_010--Hb_004487_060 Hb_001288_050 Hb_001288_050 Hb_110737_010--Hb_001288_050 Hb_000226_110 Hb_000226_110 Hb_001369_270--Hb_000226_110 Hb_016835_020 Hb_016835_020 Hb_001369_270--Hb_016835_020 Hb_060152_010 Hb_060152_010 Hb_001369_270--Hb_060152_010 Hb_003858_080 Hb_003858_080 Hb_001369_270--Hb_003858_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0531332 0.0580413 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0977085 0.239042

CAGE analysis