Hb_003858_080

Information

Type -
Description -
Location Contig3858: 105698-106517
Sequence    

Annotation

kegg
ID tcc:TCM_026065
description Germin-like protein 2
nr
ID XP_007030265.1
description Germin-like protein 2 [Theobroma cacao]
swissprot
ID Q9SFF9
description Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1
trembl
ID A0A061F272
description Germin-like protein 2 OS=Theobroma cacao GN=TCM_026065 PE=4 SV=1
Gene Ontology
ID GO:0005576
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003858_080 0.0 - - Germin-like protein 2 [Theobroma cacao]
2 Hb_003861_090 0.1040931028 - - adenylsulfate kinase, putative [Ricinus communis]
3 Hb_001675_040 0.114926463 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001369_270 0.122495841 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_006499_020 0.1271436801 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
6 Hb_000373_060 0.1313762754 - - PREDICTED: extensin-3 [Camelina sativa]
7 Hb_168561_010 0.1380080037 - - PREDICTED: notchless protein homolog [Jatropha curcas]
8 Hb_001622_020 0.1507352988 - - -
9 Hb_116190_010 0.1528250326 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
10 Hb_000254_060 0.157255209 - - conserved hypothetical protein [Ricinus communis]
11 Hb_060152_010 0.1611554944 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
12 Hb_004162_140 0.1613263364 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
13 Hb_000226_110 0.1625004189 - - -
14 Hb_002783_180 0.1649102972 - - Tubulin beta-6 chain [Gossypium arboreum]
15 Hb_181463_020 0.1715672051 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
16 Hb_000054_130 0.1740916692 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
17 Hb_000300_650 0.1744632484 - - PREDICTED: arabinogalactan peptide 13-like [Jatropha curcas]
18 Hb_000237_120 0.1780405237 - - PREDICTED: beta-galactosidase 3-like [Jatropha curcas]
19 Hb_011849_020 0.1812275886 - - dioxygenase family protein [Populus trichocarpa]
20 Hb_000751_060 0.1823746358 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]

Gene co-expression network

sample Hb_003858_080 Hb_003858_080 Hb_003861_090 Hb_003861_090 Hb_003858_080--Hb_003861_090 Hb_001675_040 Hb_001675_040 Hb_003858_080--Hb_001675_040 Hb_001369_270 Hb_001369_270 Hb_003858_080--Hb_001369_270 Hb_006499_020 Hb_006499_020 Hb_003858_080--Hb_006499_020 Hb_000373_060 Hb_000373_060 Hb_003858_080--Hb_000373_060 Hb_168561_010 Hb_168561_010 Hb_003858_080--Hb_168561_010 Hb_003861_090--Hb_000373_060 Hb_116190_010 Hb_116190_010 Hb_003861_090--Hb_116190_010 Hb_003861_090--Hb_006499_020 Hb_000226_110 Hb_000226_110 Hb_003861_090--Hb_000226_110 Hb_010334_050 Hb_010334_050 Hb_003861_090--Hb_010334_050 Hb_004162_140 Hb_004162_140 Hb_001675_040--Hb_004162_140 Hb_002783_180 Hb_002783_180 Hb_001675_040--Hb_002783_180 Hb_001675_040--Hb_006499_020 Hb_001675_040--Hb_168561_010 Hb_001675_040--Hb_003861_090 Hb_001369_270--Hb_000226_110 Hb_110737_010 Hb_110737_010 Hb_001369_270--Hb_110737_010 Hb_016835_020 Hb_016835_020 Hb_001369_270--Hb_016835_020 Hb_060152_010 Hb_060152_010 Hb_001369_270--Hb_060152_010 Hb_003030_050 Hb_003030_050 Hb_001369_270--Hb_003030_050 Hb_006499_020--Hb_168561_010 Hb_006499_020--Hb_116190_010 Hb_006499_020--Hb_000226_110 Hb_006499_020--Hb_000373_060 Hb_000639_010 Hb_000639_010 Hb_006499_020--Hb_000639_010 Hb_000373_060--Hb_116190_010 Hb_000373_060--Hb_010334_050 Hb_000373_060--Hb_000226_110 Hb_000645_250 Hb_000645_250 Hb_000373_060--Hb_000645_250 Hb_168561_010--Hb_000639_010 Hb_168561_010--Hb_004162_140 Hb_168561_010--Hb_116190_010 Hb_000635_100 Hb_000635_100 Hb_168561_010--Hb_000635_100 Hb_007101_140 Hb_007101_140 Hb_168561_010--Hb_007101_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0303863 0.142232 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.112002 0.134816

CAGE analysis