Hb_168561_010

Information

Type -
Description -
Location Contig168561: 217-1618
Sequence    

Annotation

kegg
ID rcu:RCOM_0964760
description Angio-associated migratory cell protein, putative (EC:2.7.11.7)
nr
ID XP_012065603.1
description PREDICTED: notchless protein homolog [Jatropha curcas]
swissprot
ID Q9FLX9
description Notchless protein homolog OS=Arabidopsis thaliana GN=NLE1 PE=2 SV=1
trembl
ID A0A067LH78
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16851 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168561_010 0.0 - - PREDICTED: notchless protein homolog [Jatropha curcas]
2 Hb_006499_020 0.0502611945 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
3 Hb_000639_010 0.073205629 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
4 Hb_004162_140 0.1168753531 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
5 Hb_116190_010 0.1277233721 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
6 Hb_000635_100 0.1313485997 - - -
7 Hb_007101_140 0.1322205448 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
8 Hb_000186_150 0.1325544137 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
9 Hb_003861_090 0.1342361838 - - adenylsulfate kinase, putative [Ricinus communis]
10 Hb_001675_040 0.1359247633 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003124_050 0.1377852744 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
12 Hb_003858_080 0.1380080037 - - Germin-like protein 2 [Theobroma cacao]
13 Hb_000226_110 0.1380477712 - - -
14 Hb_002783_180 0.1383889003 - - Tubulin beta-6 chain [Gossypium arboreum]
15 Hb_001430_040 0.1515398602 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
16 Hb_000373_060 0.1524431366 - - PREDICTED: extensin-3 [Camelina sativa]
17 Hb_000152_880 0.1526213938 - - -
18 Hb_001277_010 0.1538855857 - - unknown [Populus trichocarpa]
19 Hb_000668_050 0.1560458911 - - phosphoglycerate mutase, putative [Ricinus communis]
20 Hb_149507_010 0.157549589 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]

Gene co-expression network

sample Hb_168561_010 Hb_168561_010 Hb_006499_020 Hb_006499_020 Hb_168561_010--Hb_006499_020 Hb_000639_010 Hb_000639_010 Hb_168561_010--Hb_000639_010 Hb_004162_140 Hb_004162_140 Hb_168561_010--Hb_004162_140 Hb_116190_010 Hb_116190_010 Hb_168561_010--Hb_116190_010 Hb_000635_100 Hb_000635_100 Hb_168561_010--Hb_000635_100 Hb_007101_140 Hb_007101_140 Hb_168561_010--Hb_007101_140 Hb_006499_020--Hb_116190_010 Hb_000226_110 Hb_000226_110 Hb_006499_020--Hb_000226_110 Hb_003861_090 Hb_003861_090 Hb_006499_020--Hb_003861_090 Hb_000373_060 Hb_000373_060 Hb_006499_020--Hb_000373_060 Hb_006499_020--Hb_000639_010 Hb_000639_010--Hb_000635_100 Hb_001277_010 Hb_001277_010 Hb_000639_010--Hb_001277_010 Hb_000639_010--Hb_007101_140 Hb_032572_010 Hb_032572_010 Hb_000639_010--Hb_032572_010 Hb_004162_140--Hb_007101_140 Hb_002783_180 Hb_002783_180 Hb_004162_140--Hb_002783_180 Hb_001675_040 Hb_001675_040 Hb_004162_140--Hb_001675_040 Hb_000152_880 Hb_000152_880 Hb_004162_140--Hb_000152_880 Hb_000140_500 Hb_000140_500 Hb_004162_140--Hb_000140_500 Hb_116190_010--Hb_000373_060 Hb_116190_010--Hb_003861_090 Hb_010334_050 Hb_010334_050 Hb_116190_010--Hb_010334_050 Hb_116190_010--Hb_000226_110 Hb_001430_040 Hb_001430_040 Hb_000635_100--Hb_001430_040 Hb_003968_030 Hb_003968_030 Hb_000635_100--Hb_003968_030 Hb_000186_150 Hb_000186_150 Hb_000635_100--Hb_000186_150 Hb_010264_020 Hb_010264_020 Hb_000635_100--Hb_010264_020 Hb_000635_100--Hb_001277_010 Hb_007101_140--Hb_000152_880 Hb_007894_080 Hb_007894_080 Hb_007101_140--Hb_007894_080 Hb_000017_140 Hb_000017_140 Hb_007101_140--Hb_000017_140 Hb_029639_030 Hb_029639_030 Hb_007101_140--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_007101_140--Hb_000181_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0663378 0.129704 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0826805 0.102894

CAGE analysis