Hb_001430_040

Information

Type -
Description -
Location Contig1430: 47418-59714
Sequence    

Annotation

kegg
ID pop:POPTR_0013s07440g
description POPTRDRAFT_807031; hypothetical protein
nr
ID BAH10645.1
description gamma-tocopherol methyltransferase [Hevea brasiliensis]
swissprot
ID Q6ZIK0
description Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1
trembl
ID B7X942
description Gamma-tocopherol methyltransferase OS=Hevea brasiliensis GN=gamma-tmt PE=2 SV=1
Gene Ontology
ID GO:0050342
description gamma-tocopherol methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11359: 47730-48097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001430_040 0.0 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
2 Hb_000186_150 0.0410685524 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
3 Hb_003124_050 0.0643585255 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
4 Hb_003968_030 0.0656617128 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_000635_100 0.0724550548 - - -
6 Hb_146036_010 0.0791223741 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
7 Hb_010264_020 0.1151754774 - - unnamed protein product [Vitis vinifera]
8 Hb_009456_010 0.1235398075 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
9 Hb_002566_020 0.1286582095 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
10 Hb_000639_010 0.1327080521 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
11 Hb_002783_180 0.1332543626 - - Tubulin beta-6 chain [Gossypium arboreum]
12 Hb_005332_160 0.1394192254 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
13 Hb_007684_010 0.1426619449 - - conserved hypothetical protein [Ricinus communis]
14 Hb_149507_010 0.1432195137 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
15 Hb_001777_010 0.1472890836 - - -
16 Hb_168561_010 0.1515398602 - - PREDICTED: notchless protein homolog [Jatropha curcas]
17 Hb_149882_010 0.1561821468 - - PREDICTED: probable receptor protein kinase TMK1 [Populus euphratica]
18 Hb_003607_090 0.1570978842 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
19 Hb_000789_160 0.1617420124 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
20 Hb_032572_010 0.1621498226 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]

Gene co-expression network

sample Hb_001430_040 Hb_001430_040 Hb_000186_150 Hb_000186_150 Hb_001430_040--Hb_000186_150 Hb_003124_050 Hb_003124_050 Hb_001430_040--Hb_003124_050 Hb_003968_030 Hb_003968_030 Hb_001430_040--Hb_003968_030 Hb_000635_100 Hb_000635_100 Hb_001430_040--Hb_000635_100 Hb_146036_010 Hb_146036_010 Hb_001430_040--Hb_146036_010 Hb_010264_020 Hb_010264_020 Hb_001430_040--Hb_010264_020 Hb_000186_150--Hb_003124_050 Hb_000186_150--Hb_146036_010 Hb_000186_150--Hb_003968_030 Hb_000186_150--Hb_000635_100 Hb_002783_180 Hb_002783_180 Hb_000186_150--Hb_002783_180 Hb_007684_010 Hb_007684_010 Hb_003124_050--Hb_007684_010 Hb_003124_050--Hb_146036_010 Hb_003124_050--Hb_000635_100 Hb_003124_050--Hb_002783_180 Hb_003968_030--Hb_146036_010 Hb_003968_030--Hb_000635_100 Hb_149507_010 Hb_149507_010 Hb_003968_030--Hb_149507_010 Hb_005332_160 Hb_005332_160 Hb_003968_030--Hb_005332_160 Hb_000639_010 Hb_000639_010 Hb_000635_100--Hb_000639_010 Hb_000635_100--Hb_010264_020 Hb_001277_010 Hb_001277_010 Hb_000635_100--Hb_001277_010 Hb_000034_060 Hb_000034_060 Hb_146036_010--Hb_000034_060 Hb_146036_010--Hb_005332_160 Hb_027506_030 Hb_027506_030 Hb_010264_020--Hb_027506_030 Hb_000303_060 Hb_000303_060 Hb_010264_020--Hb_000303_060 Hb_085962_010 Hb_085962_010 Hb_010264_020--Hb_085962_010 Hb_004804_010 Hb_004804_010 Hb_010264_020--Hb_004804_010 Hb_032572_010 Hb_032572_010 Hb_010264_020--Hb_032572_010 Hb_001396_030 Hb_001396_030 Hb_010264_020--Hb_001396_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0543781 0.17423 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0496298 0.0642164

CAGE analysis