Hb_000186_150

Information

Type -
Description -
Location Contig186: 214895-216969
Sequence    

Annotation

kegg
ID pda:103714067
description light-induced protein, chloroplastic-like
nr
ID XP_009783682.1
description PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0D3E8B6
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0009535
description plastid-lipid-associated chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_150 0.0 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
2 Hb_001430_040 0.0410685524 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
3 Hb_003124_050 0.0571066576 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
4 Hb_146036_010 0.063637171 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
5 Hb_003968_030 0.0799601273 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_000635_100 0.0898973147 - - -
7 Hb_002783_180 0.1097904366 - - Tubulin beta-6 chain [Gossypium arboreum]
8 Hb_009456_010 0.1162550583 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
9 Hb_002566_020 0.1171308436 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
10 Hb_149507_010 0.1306109768 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]
11 Hb_168561_010 0.1325544137 - - PREDICTED: notchless protein homolog [Jatropha curcas]
12 Hb_000639_010 0.1330565623 transcription factor TF Family: ERF hypothetical protein JCGZ_09727 [Jatropha curcas]
13 Hb_010264_020 0.1381706449 - - unnamed protein product [Vitis vinifera]
14 Hb_007684_010 0.1452792632 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005332_160 0.1464575207 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
16 Hb_002370_020 0.1549542817 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
17 Hb_000389_100 0.156206444 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
18 Hb_001777_010 0.1585761685 - - -
19 Hb_000034_060 0.162356895 - - PREDICTED: O-acyltransferase WSD1-like [Citrus sinensis]
20 Hb_003607_090 0.1656405706 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]

Gene co-expression network

sample Hb_000186_150 Hb_000186_150 Hb_001430_040 Hb_001430_040 Hb_000186_150--Hb_001430_040 Hb_003124_050 Hb_003124_050 Hb_000186_150--Hb_003124_050 Hb_146036_010 Hb_146036_010 Hb_000186_150--Hb_146036_010 Hb_003968_030 Hb_003968_030 Hb_000186_150--Hb_003968_030 Hb_000635_100 Hb_000635_100 Hb_000186_150--Hb_000635_100 Hb_002783_180 Hb_002783_180 Hb_000186_150--Hb_002783_180 Hb_001430_040--Hb_003124_050 Hb_001430_040--Hb_003968_030 Hb_001430_040--Hb_000635_100 Hb_001430_040--Hb_146036_010 Hb_010264_020 Hb_010264_020 Hb_001430_040--Hb_010264_020 Hb_007684_010 Hb_007684_010 Hb_003124_050--Hb_007684_010 Hb_003124_050--Hb_146036_010 Hb_003124_050--Hb_000635_100 Hb_003124_050--Hb_002783_180 Hb_146036_010--Hb_003968_030 Hb_000034_060 Hb_000034_060 Hb_146036_010--Hb_000034_060 Hb_005332_160 Hb_005332_160 Hb_146036_010--Hb_005332_160 Hb_003968_030--Hb_000635_100 Hb_149507_010 Hb_149507_010 Hb_003968_030--Hb_149507_010 Hb_003968_030--Hb_005332_160 Hb_000639_010 Hb_000639_010 Hb_000635_100--Hb_000639_010 Hb_000635_100--Hb_010264_020 Hb_001277_010 Hb_001277_010 Hb_000635_100--Hb_001277_010 Hb_002566_020 Hb_002566_020 Hb_002783_180--Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_002783_180--Hb_009456_010 Hb_008304_050 Hb_008304_050 Hb_002783_180--Hb_008304_050 Hb_004162_140 Hb_004162_140 Hb_002783_180--Hb_004162_140 Hb_000389_100 Hb_000389_100 Hb_002783_180--Hb_000389_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0871141 0.31933 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.1091 0.131751

CAGE analysis