Hb_002783_180

Information

Type -
Description -
Location Contig2783: 189259-193376
Sequence    

Annotation

kegg
ID rcu:RCOM_1598040
description tubulin beta chain, putative
nr
ID KHG21743.1
description Tubulin beta-6 chain [Gossypium arboreum]
swissprot
ID P18025
description Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1
trembl
ID A0A0B0P4U1
description Tubulin beta-6 chain OS=Gossypium arboreum GN=F383_09979 PE=3 SV=1
Gene Ontology
ID GO:0005737
description tubulin beta-2c chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29051: 187865-188363 , PASA_asmbl_29052: 189456-193632
cDNA
(Sanger)
(ID:Location)		 048_H15.ab1: 189456-192777

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_180 0.0 - - Tubulin beta-6 chain [Gossypium arboreum]
2 Hb_002566_020 0.0576258671 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
3 Hb_009456_010 0.0701179297 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
4 Hb_008304_050 0.1013892692 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
5 Hb_004162_140 0.1020295637 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
6 Hb_000389_100 0.1056982822 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
7 Hb_000186_150 0.1097904366 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
8 Hb_003633_170 0.1116807991 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007370_010 0.1127932228 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
10 Hb_001675_040 0.1155739387 - - conserved hypothetical protein [Ricinus communis]
11 Hb_031224_010 0.1195726401 - - -
12 Hb_003124_050 0.1209309849 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
13 Hb_004667_030 0.1211779542 - - hypothetical protein VITISV_034568 [Vitis vinifera]
14 Hb_007017_100 0.1266934469 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
15 Hb_001430_040 0.1332543626 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
16 Hb_001404_070 0.1336210989 - - sucrose synthase 4 [Hevea brasiliensis]
17 Hb_146036_010 0.136164091 - - hypothetical protein B456_005G052500 [Gossypium raimondii]
18 Hb_000152_880 0.1366091014 - - -
19 Hb_168561_010 0.1383889003 - - PREDICTED: notchless protein homolog [Jatropha curcas]
20 Hb_149507_010 0.1390193152 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Malus domestica]

Gene co-expression network

sample Hb_002783_180 Hb_002783_180 Hb_002566_020 Hb_002566_020 Hb_002783_180--Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_002783_180--Hb_009456_010 Hb_008304_050 Hb_008304_050 Hb_002783_180--Hb_008304_050 Hb_004162_140 Hb_004162_140 Hb_002783_180--Hb_004162_140 Hb_000389_100 Hb_000389_100 Hb_002783_180--Hb_000389_100 Hb_000186_150 Hb_000186_150 Hb_002783_180--Hb_000186_150 Hb_002566_020--Hb_009456_010 Hb_031224_010 Hb_031224_010 Hb_002566_020--Hb_031224_010 Hb_003633_170 Hb_003633_170 Hb_002566_020--Hb_003633_170 Hb_002566_020--Hb_000389_100 Hb_007370_010 Hb_007370_010 Hb_002566_020--Hb_007370_010 Hb_009456_010--Hb_007370_010 Hb_001777_010 Hb_001777_010 Hb_009456_010--Hb_001777_010 Hb_009456_010--Hb_031224_010 Hb_009456_010--Hb_000389_100 Hb_008304_050--Hb_000389_100 Hb_004893_010 Hb_004893_010 Hb_008304_050--Hb_004893_010 Hb_008304_050--Hb_003633_170 Hb_008304_050--Hb_002566_020 Hb_008304_050--Hb_031224_010 Hb_007101_140 Hb_007101_140 Hb_004162_140--Hb_007101_140 Hb_001675_040 Hb_001675_040 Hb_004162_140--Hb_001675_040 Hb_000152_880 Hb_000152_880 Hb_004162_140--Hb_000152_880 Hb_000140_500 Hb_000140_500 Hb_004162_140--Hb_000140_500 Hb_168561_010 Hb_168561_010 Hb_004162_140--Hb_168561_010 Hb_000561_040 Hb_000561_040 Hb_000389_100--Hb_000561_040 Hb_000389_100--Hb_031224_010 Hb_001430_040 Hb_001430_040 Hb_000186_150--Hb_001430_040 Hb_003124_050 Hb_003124_050 Hb_000186_150--Hb_003124_050 Hb_146036_010 Hb_146036_010 Hb_000186_150--Hb_146036_010 Hb_003968_030 Hb_003968_030 Hb_000186_150--Hb_003968_030 Hb_000635_100 Hb_000635_100 Hb_000186_150--Hb_000635_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0182673 1.30097 9.4104 34.886 0.0171155 0.0192751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0609964 16.4199 17.5056

CAGE analysis