Hb_004162_140

Information

Type -
Description -
Location Contig4162: 135308-144773
Sequence    

Annotation

kegg
ID vvi:100267109
description serine carboxypeptidase-like 51
nr
ID XP_012064664.1
description PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
swissprot
ID Q67Y83
description Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2
trembl
ID A0A0D9VUT5
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41176: 135251-139550 , PASA_asmbl_41177: 140190-142802 , PASA_asmbl_41178: 142811-144361
cDNA
(Sanger)
(ID:Location)		 001_J14.ab1: 137694-139517

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004162_140 0.0 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
2 Hb_007101_140 0.0987629214 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
3 Hb_002783_180 0.1020295637 - - Tubulin beta-6 chain [Gossypium arboreum]
4 Hb_001675_040 0.1061255057 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000152_880 0.1077963311 - - -
6 Hb_000140_500 0.1161313288 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_168561_010 0.1168753531 - - PREDICTED: notchless protein homolog [Jatropha curcas]
8 Hb_000181_220 0.1182763021 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
9 Hb_000017_140 0.1193826768 - - polygalacturonase, putative [Ricinus communis]
10 Hb_007894_080 0.1207805695 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004667_030 0.121659671 - - hypothetical protein VITISV_034568 [Vitis vinifera]
12 Hb_033772_060 0.1266649237 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009456_010 0.1300137185 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
14 Hb_010264_010 0.1301225958 - - PREDICTED: protein ZINC INDUCED FACILITATOR-LIKE 1-like [Jatropha curcas]
15 Hb_006142_050 0.1301595084 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
16 Hb_006499_020 0.1315616195 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
17 Hb_002566_020 0.1339907037 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
18 Hb_007017_100 0.1342130768 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
19 Hb_000337_030 0.1355656179 - - amino acid transporter, putative [Ricinus communis]
20 Hb_029639_030 0.1357219333 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004162_140 Hb_004162_140 Hb_007101_140 Hb_007101_140 Hb_004162_140--Hb_007101_140 Hb_002783_180 Hb_002783_180 Hb_004162_140--Hb_002783_180 Hb_001675_040 Hb_001675_040 Hb_004162_140--Hb_001675_040 Hb_000152_880 Hb_000152_880 Hb_004162_140--Hb_000152_880 Hb_000140_500 Hb_000140_500 Hb_004162_140--Hb_000140_500 Hb_168561_010 Hb_168561_010 Hb_004162_140--Hb_168561_010 Hb_007101_140--Hb_000152_880 Hb_007894_080 Hb_007894_080 Hb_007101_140--Hb_007894_080 Hb_000017_140 Hb_000017_140 Hb_007101_140--Hb_000017_140 Hb_029639_030 Hb_029639_030 Hb_007101_140--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_007101_140--Hb_000181_220 Hb_002566_020 Hb_002566_020 Hb_002783_180--Hb_002566_020 Hb_009456_010 Hb_009456_010 Hb_002783_180--Hb_009456_010 Hb_008304_050 Hb_008304_050 Hb_002783_180--Hb_008304_050 Hb_000389_100 Hb_000389_100 Hb_002783_180--Hb_000389_100 Hb_000186_150 Hb_000186_150 Hb_002783_180--Hb_000186_150 Hb_003858_080 Hb_003858_080 Hb_001675_040--Hb_003858_080 Hb_001675_040--Hb_002783_180 Hb_006499_020 Hb_006499_020 Hb_001675_040--Hb_006499_020 Hb_001675_040--Hb_168561_010 Hb_003861_090 Hb_003861_090 Hb_001675_040--Hb_003861_090 Hb_000152_880--Hb_000017_140 Hb_000152_880--Hb_007894_080 Hb_033772_060 Hb_033772_060 Hb_000152_880--Hb_033772_060 Hb_000152_880--Hb_029639_030 Hb_027506_030 Hb_027506_030 Hb_000152_880--Hb_027506_030 Hb_001278_090 Hb_001278_090 Hb_000140_500--Hb_001278_090 Hb_000140_500--Hb_000181_220 Hb_000621_030 Hb_000621_030 Hb_000140_500--Hb_000621_030 Hb_000140_500--Hb_029639_030 Hb_001488_350 Hb_001488_350 Hb_000140_500--Hb_001488_350 Hb_168561_010--Hb_006499_020 Hb_000639_010 Hb_000639_010 Hb_168561_010--Hb_000639_010 Hb_116190_010 Hb_116190_010 Hb_168561_010--Hb_116190_010 Hb_000635_100 Hb_000635_100 Hb_168561_010--Hb_000635_100 Hb_168561_010--Hb_007101_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.177606 1.33238 3.10462 0 0.00686223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0130904 0.0249832 1.78749 2.61877

CAGE analysis