Hb_027506_030

Information

Type -
Description -
Location Contig27506: 61565-63376
Sequence    

Annotation

kegg
ID rcu:RCOM_0632160
description 9-cis-epoxycarotenoid dioxygenase, putative
nr
ID XP_002519665.1
description 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
swissprot
ID Q9C6Z1
description Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1
trembl
ID B9S0Z6
description 9-cis-epoxycarotenoid dioxygenase, putative OS=Ricinus communis GN=RCOM_0632160 PE=4 SV=1
Gene Ontology
ID GO:0051213
description probable 9-cis-epoxycarotenoid dioxygenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28825: 61667-61938 , PASA_asmbl_28826: 62098-62893 , PASA_asmbl_28827: 62911-63680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027506_030 0.0 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
2 Hb_085962_010 0.0456150474 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
3 Hb_004804_010 0.0537753146 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
4 Hb_001396_030 0.0581540165 - - hypothetical protein POPTR_0001s13520g [Populus trichocarpa]
5 Hb_010264_020 0.062791186 - - unnamed protein product [Vitis vinifera]
6 Hb_000303_060 0.0648825611 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_032572_010 0.0813345198 - - PREDICTED: phospholipase A2-alpha [Jatropha curcas]
8 Hb_000152_880 0.0956479411 - - -
9 Hb_138585_010 0.099650592 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
10 Hb_002272_120 0.1028438889 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
11 Hb_009767_060 0.1041254376 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
12 Hb_001541_130 0.1056223357 - - GDSL esterase/lipase [Morus notabilis]
13 Hb_000017_140 0.1073527549 - - polygalacturonase, putative [Ricinus communis]
14 Hb_000112_080 0.1113801705 - - PREDICTED: glutamate receptor 2.1-like [Populus euphratica]
15 Hb_005542_120 0.1128934265 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
16 Hb_111985_100 0.1163671939 - - beta-galactosidase, putative [Ricinus communis]
17 Hb_001287_090 0.1167153241 - - Endoglucanase 4 [Aegilops tauschii]
18 Hb_007811_020 0.1175625546 - - PREDICTED: expansin-A6 [Jatropha curcas]
19 Hb_006788_110 0.1181838543 - - PREDICTED: protein LONGIFOLIA 1 [Jatropha curcas]
20 Hb_007218_040 0.1187264535 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_027506_030 Hb_027506_030 Hb_085962_010 Hb_085962_010 Hb_027506_030--Hb_085962_010 Hb_004804_010 Hb_004804_010 Hb_027506_030--Hb_004804_010 Hb_001396_030 Hb_001396_030 Hb_027506_030--Hb_001396_030 Hb_010264_020 Hb_010264_020 Hb_027506_030--Hb_010264_020 Hb_000303_060 Hb_000303_060 Hb_027506_030--Hb_000303_060 Hb_032572_010 Hb_032572_010 Hb_027506_030--Hb_032572_010 Hb_085962_010--Hb_001396_030 Hb_085962_010--Hb_000303_060 Hb_085962_010--Hb_004804_010 Hb_085962_010--Hb_010264_020 Hb_002272_120 Hb_002272_120 Hb_085962_010--Hb_002272_120 Hb_138585_010 Hb_138585_010 Hb_004804_010--Hb_138585_010 Hb_012395_060 Hb_012395_060 Hb_004804_010--Hb_012395_060 Hb_004804_010--Hb_010264_020 Hb_169077_030 Hb_169077_030 Hb_004804_010--Hb_169077_030 Hb_000112_080 Hb_000112_080 Hb_001396_030--Hb_000112_080 Hb_007218_040 Hb_007218_040 Hb_001396_030--Hb_007218_040 Hb_001396_030--Hb_000303_060 Hb_005542_120 Hb_005542_120 Hb_001396_030--Hb_005542_120 Hb_010264_020--Hb_000303_060 Hb_010264_020--Hb_032572_010 Hb_010264_020--Hb_001396_030 Hb_009767_060 Hb_009767_060 Hb_000303_060--Hb_009767_060 Hb_000303_060--Hb_004804_010 Hb_001958_010 Hb_001958_010 Hb_032572_010--Hb_001958_010 Hb_032572_010--Hb_009767_060 Hb_032572_010--Hb_085962_010 Hb_000189_180 Hb_000189_180 Hb_032572_010--Hb_000189_180 Hb_032572_010--Hb_000303_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.078762 0.848872 1.58557 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.292104 0.877086

CAGE analysis