Hb_000181_220

Information

Type -
Description -
Location Contig181: 179816-185316
Sequence    

Annotation

kegg
ID pop:POPTR_0131s00210g
description aberrant lateral root formation 1 family protein
nr
ID XP_012076587.1
description PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
swissprot
ID Q9LUH2
description MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1
trembl
ID U7DZ93
description MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0131s00210g PE=3 SV=1
Gene Ontology
ID GO:0016020
description mate efflux family protein alf5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17517: 179863-185242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_220 0.0 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
2 Hb_029639_030 0.0736738612 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
3 Hb_033772_060 0.0940815613 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007101_140 0.0972997881 - - hypothetical protein JCGZ_21777 [Jatropha curcas]
5 Hb_007894_080 0.0982856336 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001488_350 0.1008261195 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001405_040 0.1011803889 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
8 Hb_001278_090 0.1022692145 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
9 Hb_000416_090 0.1040491402 - - Aquaporin NIP1.1, putative [Ricinus communis]
10 Hb_000152_880 0.1053934359 - - -
11 Hb_000951_090 0.1094220931 - - Oligopeptide transporter, putative [Ricinus communis]
12 Hb_020805_070 0.1102526107 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
13 Hb_000337_030 0.1108504204 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000140_500 0.1155148411 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000162_200 0.1179437305 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
16 Hb_004162_140 0.1182763021 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
17 Hb_010557_020 0.1189573798 - - Mlo protein [Hevea brasiliensis]
18 Hb_005892_040 0.119295462 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
19 Hb_004116_050 0.1200104837 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
20 Hb_000152_120 0.120072905 - - alpha-l-fucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000181_220 Hb_000181_220 Hb_029639_030 Hb_029639_030 Hb_000181_220--Hb_029639_030 Hb_033772_060 Hb_033772_060 Hb_000181_220--Hb_033772_060 Hb_007101_140 Hb_007101_140 Hb_000181_220--Hb_007101_140 Hb_007894_080 Hb_007894_080 Hb_000181_220--Hb_007894_080 Hb_001488_350 Hb_001488_350 Hb_000181_220--Hb_001488_350 Hb_001405_040 Hb_001405_040 Hb_000181_220--Hb_001405_040 Hb_000152_880 Hb_000152_880 Hb_029639_030--Hb_000152_880 Hb_029639_030--Hb_033772_060 Hb_029639_030--Hb_007894_080 Hb_005892_040 Hb_005892_040 Hb_029639_030--Hb_005892_040 Hb_000977_030 Hb_000977_030 Hb_029639_030--Hb_000977_030 Hb_033772_060--Hb_007894_080 Hb_033772_060--Hb_000152_880 Hb_093218_010 Hb_093218_010 Hb_033772_060--Hb_093218_010 Hb_033772_060--Hb_005892_040 Hb_007101_140--Hb_000152_880 Hb_007101_140--Hb_007894_080 Hb_000017_140 Hb_000017_140 Hb_007101_140--Hb_000017_140 Hb_007101_140--Hb_029639_030 Hb_004162_140 Hb_004162_140 Hb_007101_140--Hb_004162_140 Hb_007894_080--Hb_000152_880 Hb_007894_080--Hb_000017_140 Hb_000162_200 Hb_000162_200 Hb_007894_080--Hb_000162_200 Hb_004374_160 Hb_004374_160 Hb_001488_350--Hb_004374_160 Hb_039435_010 Hb_039435_010 Hb_001488_350--Hb_039435_010 Hb_000416_090 Hb_000416_090 Hb_001488_350--Hb_000416_090 Hb_000621_030 Hb_000621_030 Hb_001488_350--Hb_000621_030 Hb_001278_090 Hb_001278_090 Hb_001488_350--Hb_001278_090 Hb_020805_070 Hb_020805_070 Hb_001405_040--Hb_020805_070 Hb_004855_080 Hb_004855_080 Hb_001405_040--Hb_004855_080 Hb_000008_150 Hb_000008_150 Hb_001405_040--Hb_000008_150 Hb_004116_050 Hb_004116_050 Hb_001405_040--Hb_004116_050 Hb_003506_010 Hb_003506_010 Hb_001405_040--Hb_003506_010 Hb_001405_040--Hb_005892_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0113362 1.20172 6.83491 8.77988 0 0.0110681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0773593 0.202885 0.0383406 5.03482 8.58579

CAGE analysis