Hb_000977_030

Information

Type -
Description -
Location Contig977: 25553-30901
Sequence    

Annotation

kegg
ID zma:100277104
description uncharacterized LOC100277104
nr
ID CBI23359.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6H7W3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0220g00180 PE=4 SV=1
Gene Ontology
ID GO:0005886
description beta-hexosaminidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64144: 8930-30864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_026240_020 0.0572995756 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
3 Hb_000290_030 0.0797773547 - - phosphoinositide 5-phosphatase, putative [Ricinus communis]
4 Hb_003580_050 0.081798784 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
5 Hb_000162_200 0.0828398259 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
6 Hb_005892_040 0.0880251507 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
7 Hb_002724_010 0.0920234343 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
8 Hb_029639_030 0.0921856126 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
9 Hb_000318_010 0.0932082926 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
10 Hb_003506_010 0.1008161034 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
11 Hb_000996_030 0.1009976263 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
12 Hb_009113_080 0.1013508908 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
13 Hb_010557_020 0.1020138958 - - Mlo protein [Hevea brasiliensis]
14 Hb_001946_200 0.1020530783 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
15 Hb_005730_110 0.1022418135 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
16 Hb_000473_100 0.1065752745 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_003454_050 0.1071984823 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
18 Hb_039075_020 0.1079997503 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
19 Hb_000856_200 0.1095656332 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
20 Hb_004162_320 0.1106731577 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000977_030 Hb_000977_030 Hb_026240_020 Hb_026240_020 Hb_000977_030--Hb_026240_020 Hb_000290_030 Hb_000290_030 Hb_000977_030--Hb_000290_030 Hb_003580_050 Hb_003580_050 Hb_000977_030--Hb_003580_050 Hb_000162_200 Hb_000162_200 Hb_000977_030--Hb_000162_200 Hb_005892_040 Hb_005892_040 Hb_000977_030--Hb_005892_040 Hb_002724_010 Hb_002724_010 Hb_000977_030--Hb_002724_010 Hb_003092_020 Hb_003092_020 Hb_026240_020--Hb_003092_020 Hb_026240_020--Hb_005892_040 Hb_003454_050 Hb_003454_050 Hb_026240_020--Hb_003454_050 Hb_005730_110 Hb_005730_110 Hb_026240_020--Hb_005730_110 Hb_003506_010 Hb_003506_010 Hb_026240_020--Hb_003506_010 Hb_010557_020 Hb_010557_020 Hb_000290_030--Hb_010557_020 Hb_000856_200 Hb_000856_200 Hb_000290_030--Hb_000856_200 Hb_000290_030--Hb_002724_010 Hb_000160_250 Hb_000160_250 Hb_000290_030--Hb_000160_250 Hb_000473_100 Hb_000473_100 Hb_000290_030--Hb_000473_100 Hb_028008_040 Hb_028008_040 Hb_003580_050--Hb_028008_040 Hb_000996_030 Hb_000996_030 Hb_003580_050--Hb_000996_030 Hb_004696_010 Hb_004696_010 Hb_003580_050--Hb_004696_010 Hb_003580_050--Hb_002724_010 Hb_004218_200 Hb_004218_200 Hb_003580_050--Hb_004218_200 Hb_000318_010 Hb_000318_010 Hb_000162_200--Hb_000318_010 Hb_000162_200--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_000162_200--Hb_004162_320 Hb_000162_200--Hb_005892_040 Hb_007894_080 Hb_007894_080 Hb_000162_200--Hb_007894_080 Hb_005892_040--Hb_003506_010 Hb_005892_040--Hb_004162_320 Hb_001405_040 Hb_001405_040 Hb_005892_040--Hb_001405_040 Hb_020805_070 Hb_020805_070 Hb_005892_040--Hb_020805_070 Hb_000977_020 Hb_000977_020 Hb_002724_010--Hb_000977_020 Hb_000703_120 Hb_000703_120 Hb_002724_010--Hb_000703_120 Hb_000212_410 Hb_000212_410 Hb_002724_010--Hb_000212_410 Hb_002724_010--Hb_000318_010 Hb_000627_050 Hb_000627_050 Hb_002724_010--Hb_000627_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.335734 11.8046 41.3359 53.0223 0.151371 0.255649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 15.1314 38.6316

CAGE analysis