Hb_000977_020

Information

Type -
Description -
Location Contig977: 9194-14954
Sequence    

Annotation

kegg
ID rcu:RCOM_1076600
description beta-hexosaminidase, putative (EC:3.2.1.52)
nr
ID XP_002514769.1
description beta-hexosaminidase, putative [Ricinus communis]
swissprot
ID Q8L7S6
description Beta-hexosaminidase 3 OS=Arabidopsis thaliana GN=HEXO3 PE=1 SV=1
trembl
ID B9RM00
description Beta-hexosaminidase OS=Ricinus communis GN=RCOM_1076600 PE=3 SV=1
Gene Ontology
ID GO:0009505
description beta-hexosaminidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64144: 8930-30864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000977_020 0.0 - - beta-hexosaminidase, putative [Ricinus communis]
2 Hb_002724_010 0.0607745595 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
3 Hb_000627_050 0.0749671796 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
4 Hb_000212_410 0.0765578571 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
5 Hb_001098_040 0.0805546054 - - hypothetical protein JCGZ_00749 [Jatropha curcas]
6 Hb_009421_070 0.0896148916 - - PREDICTED: cell number regulator 1-like [Jatropha curcas]
7 Hb_000703_120 0.090847979 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
8 Hb_002942_200 0.0915598204 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
9 Hb_000076_060 0.0928390997 - - hypothetical protein RCOM_0586940 [Ricinus communis]
10 Hb_000318_010 0.0928558166 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
11 Hb_002572_040 0.0936844305 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
12 Hb_000665_210 0.0956844192 - - PREDICTED: synaptotagmin-4 [Jatropha curcas]
13 Hb_007270_020 0.0967655762 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
14 Hb_009788_020 0.0991979942 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
15 Hb_005694_160 0.0998730519 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000784_060 0.1008277744 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003835_080 0.1010964052 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
18 Hb_006075_030 0.1024460134 - - PREDICTED: uncharacterized protein LOC105641890 isoform X1 [Jatropha curcas]
19 Hb_060253_010 0.1042891198 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
20 Hb_000329_440 0.1060222826 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]

Gene co-expression network

sample Hb_000977_020 Hb_000977_020 Hb_002724_010 Hb_002724_010 Hb_000977_020--Hb_002724_010 Hb_000627_050 Hb_000627_050 Hb_000977_020--Hb_000627_050 Hb_000212_410 Hb_000212_410 Hb_000977_020--Hb_000212_410 Hb_001098_040 Hb_001098_040 Hb_000977_020--Hb_001098_040 Hb_009421_070 Hb_009421_070 Hb_000977_020--Hb_009421_070 Hb_000703_120 Hb_000703_120 Hb_000977_020--Hb_000703_120 Hb_002724_010--Hb_000703_120 Hb_002724_010--Hb_000212_410 Hb_000318_010 Hb_000318_010 Hb_002724_010--Hb_000318_010 Hb_002724_010--Hb_000627_050 Hb_000290_030 Hb_000290_030 Hb_002724_010--Hb_000290_030 Hb_000627_050--Hb_000212_410 Hb_000627_050--Hb_000703_120 Hb_009788_020 Hb_009788_020 Hb_000627_050--Hb_009788_020 Hb_007270_020 Hb_007270_020 Hb_000627_050--Hb_007270_020 Hb_069696_020 Hb_069696_020 Hb_000627_050--Hb_069696_020 Hb_000212_410--Hb_009788_020 Hb_000212_410--Hb_000703_120 Hb_000212_410--Hb_007270_020 Hb_060253_010 Hb_060253_010 Hb_000212_410--Hb_060253_010 Hb_002942_200 Hb_002942_200 Hb_001098_040--Hb_002942_200 Hb_000329_440 Hb_000329_440 Hb_001098_040--Hb_000329_440 Hb_001098_040--Hb_009421_070 Hb_001098_040--Hb_060253_010 Hb_001098_040--Hb_000627_050 Hb_000665_210 Hb_000665_210 Hb_009421_070--Hb_000665_210 Hb_001206_100 Hb_001206_100 Hb_009421_070--Hb_001206_100 Hb_000784_060 Hb_000784_060 Hb_009421_070--Hb_000784_060 Hb_005842_010 Hb_005842_010 Hb_009421_070--Hb_005842_010 Hb_004032_190 Hb_004032_190 Hb_009421_070--Hb_004032_190 Hb_000703_120--Hb_009788_020 Hb_002890_200 Hb_002890_200 Hb_000703_120--Hb_002890_200 Hb_000703_120--Hb_007270_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.159391 7.80203 34.915 47.8608 0.326475 0.362445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.168619 0.0884048 0 9.65502 55.8043

CAGE analysis