Hb_000318_010

Information

Type -
Description -
Location Contig318: 9155-15479
Sequence    

Annotation

kegg
ID rcu:RCOM_0774500
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID AFC88293.1
description calcium-dependent protein kinase 6 [Hevea brasiliensis]
swissprot
ID P53681
description CDPK-related protein kinase OS=Daucus carota GN=CRK PE=2 SV=1
trembl
ID J7F6B4
description Calcium-dependent protein kinase 6 OS=Hevea brasiliensis GN=CDPK6 PE=2 SV=1
Gene Ontology
ID GO:0004683
description cdpk-related kinase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33484: 9174-15178
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_010 0.0 - - calcium-dependent protein kinase 6 [Hevea brasiliensis]
2 Hb_000162_200 0.0649409615 - - PREDICTED: uncharacterized protein LOC105641759 isoform X2 [Jatropha curcas]
3 Hb_002724_010 0.076859438 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Citrus sinensis]
4 Hb_000703_120 0.0794948669 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
5 Hb_001417_060 0.0911181475 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
6 Hb_000977_020 0.0928558166 - - beta-hexosaminidase, putative [Ricinus communis]
7 Hb_000977_030 0.0932082926 - - unnamed protein product [Vitis vinifera]
8 Hb_000627_050 0.0937185547 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
9 Hb_002890_200 0.0949534908 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
10 Hb_000212_410 0.0997811055 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
11 Hb_002635_020 0.1013264128 - - hypothetical protein POPTR_0018s09790g [Populus trichocarpa]
12 Hb_017358_020 0.1022517123 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
13 Hb_001405_040 0.1026443654 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
14 Hb_000416_090 0.1053616972 - - Aquaporin NIP1.1, putative [Ricinus communis]
15 Hb_003580_050 0.1061848056 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
16 Hb_001046_030 0.1068409394 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_009788_020 0.1072529822 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
18 Hb_003506_010 0.1079254742 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
19 Hb_007894_080 0.1095741639 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000836_030 0.1104054506 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]

Gene co-expression network

sample Hb_000318_010 Hb_000318_010 Hb_000162_200 Hb_000162_200 Hb_000318_010--Hb_000162_200 Hb_002724_010 Hb_002724_010 Hb_000318_010--Hb_002724_010 Hb_000703_120 Hb_000703_120 Hb_000318_010--Hb_000703_120 Hb_001417_060 Hb_001417_060 Hb_000318_010--Hb_001417_060 Hb_000977_020 Hb_000977_020 Hb_000318_010--Hb_000977_020 Hb_000977_030 Hb_000977_030 Hb_000318_010--Hb_000977_030 Hb_003506_010 Hb_003506_010 Hb_000162_200--Hb_003506_010 Hb_004162_320 Hb_004162_320 Hb_000162_200--Hb_004162_320 Hb_000162_200--Hb_000977_030 Hb_005892_040 Hb_005892_040 Hb_000162_200--Hb_005892_040 Hb_007894_080 Hb_007894_080 Hb_000162_200--Hb_007894_080 Hb_002724_010--Hb_000977_020 Hb_002724_010--Hb_000703_120 Hb_000212_410 Hb_000212_410 Hb_002724_010--Hb_000212_410 Hb_000627_050 Hb_000627_050 Hb_002724_010--Hb_000627_050 Hb_000290_030 Hb_000290_030 Hb_002724_010--Hb_000290_030 Hb_000703_120--Hb_000627_050 Hb_009788_020 Hb_009788_020 Hb_000703_120--Hb_009788_020 Hb_000703_120--Hb_000212_410 Hb_002890_200 Hb_002890_200 Hb_000703_120--Hb_002890_200 Hb_007270_020 Hb_007270_020 Hb_000703_120--Hb_007270_020 Hb_001046_030 Hb_001046_030 Hb_001417_060--Hb_001046_030 Hb_017358_020 Hb_017358_020 Hb_001417_060--Hb_017358_020 Hb_000868_130 Hb_000868_130 Hb_001417_060--Hb_000868_130 Hb_001789_120 Hb_001789_120 Hb_001417_060--Hb_001789_120 Hb_001417_060--Hb_000627_050 Hb_000941_090 Hb_000941_090 Hb_001417_060--Hb_000941_090 Hb_000977_020--Hb_000627_050 Hb_000977_020--Hb_000212_410 Hb_001098_040 Hb_001098_040 Hb_000977_020--Hb_001098_040 Hb_009421_070 Hb_009421_070 Hb_000977_020--Hb_009421_070 Hb_000977_020--Hb_000703_120 Hb_026240_020 Hb_026240_020 Hb_000977_030--Hb_026240_020 Hb_000977_030--Hb_000290_030 Hb_003580_050 Hb_003580_050 Hb_000977_030--Hb_003580_050 Hb_000977_030--Hb_005892_040 Hb_000977_030--Hb_002724_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.196617 2.99435 9.96024 10.9788 0.161209 0.0631282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0151744 0 4.24478 13.489

CAGE analysis