Hb_001789_120

Information

Type -
Description -
Location Contig1789: 130391-139659
Sequence    

Annotation

kegg
ID rcu:RCOM_1583100
description short-chain dehydrogenase, putative (EC:1.3.1.33)
nr
ID XP_012090224.1
description PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
swissprot
ID Q6RVV4
description Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1
trembl
ID B9RIW1
description Short-chain dehydrogenase, putative OS=Ricinus communis GN=RCOM_1583100 PE=4 SV=1
Gene Ontology
ID GO:0009706
description short-chain dehydrogenase tic chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17216: 130423-139607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_120 0.0 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
2 Hb_013394_120 0.044781554 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_000818_090 0.0513554156 - - glutamate receptor 3 plant, putative [Ricinus communis]
4 Hb_004880_050 0.0568540523 - - conserved hypothetical protein [Ricinus communis]
5 Hb_014700_030 0.0574079684 - - tryptophan synthase beta chain, putative [Ricinus communis]
6 Hb_010222_060 0.0616302494 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_132840_170 0.0824362737 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
8 Hb_032779_010 0.0848783255 - - unnamed protein product [Vitis vinifera]
9 Hb_001417_060 0.0853112455 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
10 Hb_009522_020 0.0858851667 - - PREDICTED: protein ECERIFERUM 3 [Jatropha curcas]
11 Hb_000941_090 0.0894263276 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
12 Hb_009393_090 0.0931285928 - - acyltransferase, putative [Ricinus communis]
13 Hb_001046_030 0.09322593 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_005365_010 0.0962441399 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
15 Hb_001629_120 0.099574479 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
16 Hb_005051_010 0.1052557251 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
17 Hb_002942_200 0.10705221 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH137 isoform X1 [Jatropha curcas]
18 Hb_001100_070 0.1072884583 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_017358_020 0.1075551993 - - hypothetical protein POPTR_0014s16490g [Populus trichocarpa]
20 Hb_000815_090 0.1078674042 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001789_120 Hb_001789_120 Hb_013394_120 Hb_013394_120 Hb_001789_120--Hb_013394_120 Hb_000818_090 Hb_000818_090 Hb_001789_120--Hb_000818_090 Hb_004880_050 Hb_004880_050 Hb_001789_120--Hb_004880_050 Hb_014700_030 Hb_014700_030 Hb_001789_120--Hb_014700_030 Hb_010222_060 Hb_010222_060 Hb_001789_120--Hb_010222_060 Hb_132840_170 Hb_132840_170 Hb_001789_120--Hb_132840_170 Hb_013394_120--Hb_010222_060 Hb_013394_120--Hb_132840_170 Hb_013394_120--Hb_000818_090 Hb_009522_020 Hb_009522_020 Hb_013394_120--Hb_009522_020 Hb_013394_120--Hb_014700_030 Hb_009393_090 Hb_009393_090 Hb_000818_090--Hb_009393_090 Hb_000818_090--Hb_004880_050 Hb_005365_010 Hb_005365_010 Hb_000818_090--Hb_005365_010 Hb_001100_070 Hb_001100_070 Hb_000818_090--Hb_001100_070 Hb_004880_050--Hb_014700_030 Hb_032779_010 Hb_032779_010 Hb_004880_050--Hb_032779_010 Hb_004880_050--Hb_013394_120 Hb_004880_050--Hb_010222_060 Hb_014700_030--Hb_010222_060 Hb_014700_030--Hb_032779_010 Hb_014700_030--Hb_132840_170 Hb_010222_060--Hb_009522_020 Hb_010222_060--Hb_132840_170 Hb_002713_060 Hb_002713_060 Hb_010222_060--Hb_002713_060 Hb_173387_010 Hb_173387_010 Hb_132840_170--Hb_173387_010 Hb_000815_090 Hb_000815_090 Hb_132840_170--Hb_000815_090 Hb_132840_170--Hb_009522_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.017851 28.8406 40.3639 51.3064 0.119418 0.0344332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.203869 0.0641463 0 7.5553 65.2334

CAGE analysis