Hb_005365_010

Information

Type -
Description -
Location Contig5365: 18115-27620
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17580g
description POPTRDRAFT_835003; serine carboxypeptidase S10 family protein
nr
ID XP_012084831.1
description PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
swissprot
ID Q8L7B2
description Serine carboxypeptidase-like 20 OS=Arabidopsis thaliana GN=SCPL20 PE=2 SV=2
trembl
ID A0A067L9X9
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_15106 PE=3 SV=1
Gene Ontology
ID GO:0004180
description serine carboxypeptidase-like 20

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47575: 18259-19014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005365_010 0.0 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
2 Hb_001629_120 0.0508319832 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At4g27220 isoform X2 [Populus euphratica]
3 Hb_000173_270 0.0762123847 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
4 Hb_000818_090 0.0782637574 - - glutamate receptor 3 plant, putative [Ricinus communis]
5 Hb_007270_020 0.0808656329 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
6 Hb_001417_060 0.0911246744 - - PREDICTED: putative phospholipid-transporting ATPase 9 [Jatropha curcas]
7 Hb_044653_050 0.0914306289 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
8 Hb_009393_090 0.0919235592 - - acyltransferase, putative [Ricinus communis]
9 Hb_000212_410 0.094258603 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
10 Hb_039075_020 0.095914577 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
11 Hb_001789_120 0.0962441399 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
12 Hb_000941_090 0.097252096 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
13 Hb_028008_040 0.0973152119 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000260_410 0.0983375202 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
15 Hb_000627_050 0.0992631447 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
16 Hb_001301_260 0.1001433222 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
17 Hb_001100_070 0.1041861162 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_003873_020 0.1063529316 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
19 Hb_009788_020 0.1066684942 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
20 Hb_001143_120 0.1073966278 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]

Gene co-expression network

sample Hb_005365_010 Hb_005365_010 Hb_001629_120 Hb_001629_120 Hb_005365_010--Hb_001629_120 Hb_000173_270 Hb_000173_270 Hb_005365_010--Hb_000173_270 Hb_000818_090 Hb_000818_090 Hb_005365_010--Hb_000818_090 Hb_007270_020 Hb_007270_020 Hb_005365_010--Hb_007270_020 Hb_001417_060 Hb_001417_060 Hb_005365_010--Hb_001417_060 Hb_044653_050 Hb_044653_050 Hb_005365_010--Hb_044653_050 Hb_001629_120--Hb_000173_270 Hb_001629_120--Hb_000818_090 Hb_000023_130 Hb_000023_130 Hb_001629_120--Hb_000023_130 Hb_000185_170 Hb_000185_170 Hb_001629_120--Hb_000185_170 Hb_001051_010 Hb_001051_010 Hb_001629_120--Hb_001051_010 Hb_000260_410 Hb_000260_410 Hb_000173_270--Hb_000260_410 Hb_006570_060 Hb_006570_060 Hb_000173_270--Hb_006570_060 Hb_000173_270--Hb_044653_050 Hb_000272_030 Hb_000272_030 Hb_000173_270--Hb_000272_030 Hb_001789_120 Hb_001789_120 Hb_000818_090--Hb_001789_120 Hb_013394_120 Hb_013394_120 Hb_000818_090--Hb_013394_120 Hb_009393_090 Hb_009393_090 Hb_000818_090--Hb_009393_090 Hb_004880_050 Hb_004880_050 Hb_000818_090--Hb_004880_050 Hb_001100_070 Hb_001100_070 Hb_000818_090--Hb_001100_070 Hb_000212_410 Hb_000212_410 Hb_007270_020--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_007270_020--Hb_009788_020 Hb_060253_010 Hb_060253_010 Hb_007270_020--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_007270_020--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_007270_020--Hb_000703_120 Hb_003873_020 Hb_003873_020 Hb_007270_020--Hb_003873_020 Hb_001046_030 Hb_001046_030 Hb_001417_060--Hb_001046_030 Hb_017358_020 Hb_017358_020 Hb_001417_060--Hb_017358_020 Hb_000868_130 Hb_000868_130 Hb_001417_060--Hb_000868_130 Hb_001417_060--Hb_001789_120 Hb_001417_060--Hb_000627_050 Hb_000941_090 Hb_000941_090 Hb_001417_060--Hb_000941_090 Hb_007130_020 Hb_007130_020 Hb_044653_050--Hb_007130_020 Hb_007894_120 Hb_007894_120 Hb_044653_050--Hb_007894_120 Hb_017491_010 Hb_017491_010 Hb_044653_050--Hb_017491_010 Hb_004228_070 Hb_004228_070 Hb_044653_050--Hb_004228_070 Hb_001301_260 Hb_001301_260 Hb_044653_050--Hb_001301_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0632336 11.4327 27.7739 24.9202 0.0577696 0.0735808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.407596 0.133605 0 5.22113 27.9179

CAGE analysis