Hb_003873_020

Information

Type -
Description -
Location Contig3873: 20263-22575
Sequence    

Annotation

kegg
ID egr:104414222
description root phototropism protein 2
nr
ID XP_012077861.1
description PREDICTED: root phototropism protein 2 [Jatropha curcas]
swissprot
ID Q682S0
description Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2
trembl
ID A0A067LEM0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17285 PE=4 SV=1
Gene Ontology
ID GO:0005634
description root phototropism protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38865: 20343-22695 , PASA_asmbl_38866: 22141-22578
cDNA
(Sanger)
(ID:Location)		 013_K19.ab1: 20530-21331

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003873_020 0.0 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
2 Hb_007270_020 0.0777742064 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
3 Hb_000718_060 0.0805048234 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
4 Hb_009393_090 0.0806291021 - - acyltransferase, putative [Ricinus communis]
5 Hb_001750_020 0.0826541581 - - PREDICTED: MATE efflux family protein 6-like isoform X1 [Jatropha curcas]
6 Hb_039075_020 0.0843574381 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
7 Hb_003435_030 0.0882323745 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000486_020 0.0984378184 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
9 Hb_011909_050 0.1004147592 - - PREDICTED: calcium-binding protein PBP1 [Jatropha curcas]
10 Hb_001606_010 0.1005702389 - - kinase, putative [Ricinus communis]
11 Hb_060253_010 0.1010893625 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
12 Hb_084303_010 0.1012046847 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000156_110 0.1012334272 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
14 Hb_011472_030 0.1015943393 - - PREDICTED: putative serine/threonine-protein kinase [Jatropha curcas]
15 Hb_001926_070 0.1048146667 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
16 Hb_000302_360 0.1052554669 - - beta-carotene hydroxylase, putative [Ricinus communis]
17 Hb_010136_010 0.1059476369 - - Putative receptor-like protein kinase [Glycine soja]
18 Hb_005365_010 0.1063529316 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
19 Hb_000046_120 0.1068776939 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
20 Hb_001100_070 0.1076047099 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003873_020 Hb_003873_020 Hb_007270_020 Hb_007270_020 Hb_003873_020--Hb_007270_020 Hb_000718_060 Hb_000718_060 Hb_003873_020--Hb_000718_060 Hb_009393_090 Hb_009393_090 Hb_003873_020--Hb_009393_090 Hb_001750_020 Hb_001750_020 Hb_003873_020--Hb_001750_020 Hb_039075_020 Hb_039075_020 Hb_003873_020--Hb_039075_020 Hb_003435_030 Hb_003435_030 Hb_003873_020--Hb_003435_030 Hb_000212_410 Hb_000212_410 Hb_007270_020--Hb_000212_410 Hb_009788_020 Hb_009788_020 Hb_007270_020--Hb_009788_020 Hb_060253_010 Hb_060253_010 Hb_007270_020--Hb_060253_010 Hb_000627_050 Hb_000627_050 Hb_007270_020--Hb_000627_050 Hb_000703_120 Hb_000703_120 Hb_007270_020--Hb_000703_120 Hb_000718_060--Hb_009393_090 Hb_008221_200 Hb_008221_200 Hb_000718_060--Hb_008221_200 Hb_001100_070 Hb_001100_070 Hb_000718_060--Hb_001100_070 Hb_002066_110 Hb_002066_110 Hb_000718_060--Hb_002066_110 Hb_000718_060--Hb_007270_020 Hb_000818_090 Hb_000818_090 Hb_009393_090--Hb_000818_090 Hb_009393_090--Hb_001100_070 Hb_009393_090--Hb_008221_200 Hb_011909_050 Hb_011909_050 Hb_009393_090--Hb_011909_050 Hb_009393_090--Hb_007270_020 Hb_000046_120 Hb_000046_120 Hb_001750_020--Hb_000046_120 Hb_001750_020--Hb_003435_030 Hb_001750_020--Hb_060253_010 Hb_001750_020--Hb_007270_020 Hb_002702_010 Hb_002702_010 Hb_001750_020--Hb_002702_010 Hb_021576_130 Hb_021576_130 Hb_039075_020--Hb_021576_130 Hb_039075_020--Hb_009393_090 Hb_001366_290 Hb_001366_290 Hb_039075_020--Hb_001366_290 Hb_006922_020 Hb_006922_020 Hb_039075_020--Hb_006922_020 Hb_002490_060 Hb_002490_060 Hb_039075_020--Hb_002490_060 Hb_003435_030--Hb_000046_120 Hb_003435_030--Hb_060253_010 Hb_010136_010 Hb_010136_010 Hb_003435_030--Hb_010136_010 Hb_001942_010 Hb_001942_010 Hb_003435_030--Hb_001942_010 Hb_018591_020 Hb_018591_020 Hb_003435_030--Hb_018591_020 Hb_003435_030--Hb_002702_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0305313 41.1588 166.547 134.447 0 0.0392553
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0693987 0.0910075 0 11.8277 128.123

CAGE analysis