Hb_039075_020

Information

Type -
Description -
Location Contig39075: 3465-4121
Sequence    

Annotation

kegg
ID pmum:103331245
description uncharacterized LOC103331245
nr
ID XP_008232086.1
description PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
swissprot
ID -
description -
trembl
ID K7LY57
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0030247
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_039075_020 0.0 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
2 Hb_021576_130 0.0657335377 - - PREDICTED: chorismate mutase 2 isoform X1 [Jatropha curcas]
3 Hb_009393_090 0.0826786992 - - acyltransferase, putative [Ricinus communis]
4 Hb_003873_020 0.0843574381 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
5 Hb_001366_290 0.0879671173 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
6 Hb_006922_020 0.0884735258 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
7 Hb_002490_060 0.0906558975 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
8 Hb_007270_020 0.092067891 - - hypothetical protein JCGZ_09593 [Jatropha curcas]
9 Hb_000718_060 0.0943884723 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
10 Hb_004228_070 0.0948098576 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
11 Hb_007123_010 0.0954563018 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
12 Hb_026240_020 0.0956682618 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
13 Hb_005365_010 0.095914577 - - PREDICTED: serine carboxypeptidase-like 20 [Jatropha curcas]
14 Hb_028008_040 0.0989743908 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008221_200 0.0998842821 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
16 Hb_003454_050 0.1001552061 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
17 Hb_001794_040 0.1025308185 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
18 Hb_000627_040 0.1061883601 - - leucine-rich repeat protein, putative [Ricinus communis]
19 Hb_001100_070 0.1079281315 - - PREDICTED: ferredoxin--nitrite reductase, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_012404_020 0.1079849731 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_039075_020 Hb_039075_020 Hb_021576_130 Hb_021576_130 Hb_039075_020--Hb_021576_130 Hb_009393_090 Hb_009393_090 Hb_039075_020--Hb_009393_090 Hb_003873_020 Hb_003873_020 Hb_039075_020--Hb_003873_020 Hb_001366_290 Hb_001366_290 Hb_039075_020--Hb_001366_290 Hb_006922_020 Hb_006922_020 Hb_039075_020--Hb_006922_020 Hb_002490_060 Hb_002490_060 Hb_039075_020--Hb_002490_060 Hb_004228_070 Hb_004228_070 Hb_021576_130--Hb_004228_070 Hb_007123_010 Hb_007123_010 Hb_021576_130--Hb_007123_010 Hb_003454_050 Hb_003454_050 Hb_021576_130--Hb_003454_050 Hb_002205_150 Hb_002205_150 Hb_021576_130--Hb_002205_150 Hb_021576_130--Hb_006922_020 Hb_000718_060 Hb_000718_060 Hb_009393_090--Hb_000718_060 Hb_000818_090 Hb_000818_090 Hb_009393_090--Hb_000818_090 Hb_001100_070 Hb_001100_070 Hb_009393_090--Hb_001100_070 Hb_008221_200 Hb_008221_200 Hb_009393_090--Hb_008221_200 Hb_011909_050 Hb_011909_050 Hb_009393_090--Hb_011909_050 Hb_007270_020 Hb_007270_020 Hb_009393_090--Hb_007270_020 Hb_003873_020--Hb_007270_020 Hb_003873_020--Hb_000718_060 Hb_003873_020--Hb_009393_090 Hb_001750_020 Hb_001750_020 Hb_003873_020--Hb_001750_020 Hb_003435_030 Hb_003435_030 Hb_003873_020--Hb_003435_030 Hb_001366_290--Hb_002490_060 Hb_001157_050 Hb_001157_050 Hb_001366_290--Hb_001157_050 Hb_000627_040 Hb_000627_040 Hb_001366_290--Hb_000627_040 Hb_015048_020 Hb_015048_020 Hb_001366_290--Hb_015048_020 Hb_007290_050 Hb_007290_050 Hb_001366_290--Hb_007290_050 Hb_006922_020--Hb_007123_010 Hb_006922_020--Hb_002490_060 Hb_006922_020--Hb_000627_040 Hb_002053_180 Hb_002053_180 Hb_006922_020--Hb_002053_180 Hb_000103_370 Hb_000103_370 Hb_006922_020--Hb_000103_370 Hb_006922_020--Hb_004228_070 Hb_002490_060--Hb_000627_040 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_007237_020 Hb_007237_020 Hb_002490_060--Hb_007237_020 Hb_002490_060--Hb_007123_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0645676 0.179325 0.191915 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0283778 0.136403

CAGE analysis