Hb_000627_040

Information

Type -
Description -
Location Contig627: 67362-71679
Sequence    

Annotation

kegg
ID rcu:RCOM_1678470
description leucine-rich repeat protein, putative (EC:1.3.1.74)
nr
ID XP_002509547.1
description leucine-rich repeat protein, putative [Ricinus communis]
swissprot
ID Q8LFN2
description Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 OS=Arabidopsis thaliana GN=At3g03770 PE=2 SV=1
trembl
ID B9RBL3
description Leucine-rich repeat protein, putative OS=Ricinus communis GN=RCOM_1678470 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive leucine-rich repeat receptor-like protein kinase at3g03770

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51690: 66860-67290 , PASA_asmbl_51692: 67766-68141 , PASA_asmbl_51693: 68151-71772 , PASA_asmbl_51694: 68151-71772
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000627_040 0.0 - - leucine-rich repeat protein, putative [Ricinus communis]
2 Hb_002490_060 0.0624290907 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
3 Hb_007237_020 0.0676722534 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
4 Hb_121313_010 0.0697197019 - - PREDICTED: endoglucanase 24-like [Jatropha curcas]
5 Hb_005730_110 0.0758374509 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
6 Hb_002053_180 0.0802277132 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
7 Hb_006922_020 0.0803875609 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 34 [Jatropha curcas]
8 Hb_000086_470 0.0851224444 - - hypothetical protein JCGZ_17645 [Jatropha curcas]
9 Hb_001366_290 0.0888646923 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
10 Hb_000418_170 0.0889267492 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
11 Hb_004218_140 0.0918151204 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
12 Hb_001157_050 0.0965346309 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
13 Hb_001488_420 0.0984711148 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
14 Hb_008304_010 0.1014132566 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
15 Hb_128196_010 0.1044927609 - - conserved hypothetical protein [Ricinus communis]
16 Hb_039075_020 0.1061883601 - - PREDICTED: uncharacterized protein LOC103331245 [Prunus mume]
17 Hb_000120_340 0.1070648266 - - Cucumisin precursor, putative [Ricinus communis]
18 Hb_026240_020 0.1071293937 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
19 Hb_004592_010 0.1100297129 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
20 Hb_004117_280 0.1105231872 - - hypothetical protein JCGZ_00361 [Jatropha curcas]

Gene co-expression network

sample Hb_000627_040 Hb_000627_040 Hb_002490_060 Hb_002490_060 Hb_000627_040--Hb_002490_060 Hb_007237_020 Hb_007237_020 Hb_000627_040--Hb_007237_020 Hb_121313_010 Hb_121313_010 Hb_000627_040--Hb_121313_010 Hb_005730_110 Hb_005730_110 Hb_000627_040--Hb_005730_110 Hb_002053_180 Hb_002053_180 Hb_000627_040--Hb_002053_180 Hb_006922_020 Hb_006922_020 Hb_000627_040--Hb_006922_020 Hb_002490_060--Hb_006922_020 Hb_001366_290 Hb_001366_290 Hb_002490_060--Hb_001366_290 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_002490_060--Hb_007237_020 Hb_007123_010 Hb_007123_010 Hb_002490_060--Hb_007123_010 Hb_000086_470 Hb_000086_470 Hb_007237_020--Hb_000086_470 Hb_007237_020--Hb_002053_180 Hb_002817_030 Hb_002817_030 Hb_007237_020--Hb_002817_030 Hb_000120_340 Hb_000120_340 Hb_007237_020--Hb_000120_340 Hb_004218_140 Hb_004218_140 Hb_121313_010--Hb_004218_140 Hb_001269_060 Hb_001269_060 Hb_121313_010--Hb_001269_060 Hb_121313_010--Hb_000086_470 Hb_001377_120 Hb_001377_120 Hb_121313_010--Hb_001377_120 Hb_007632_160 Hb_007632_160 Hb_121313_010--Hb_007632_160 Hb_026240_020 Hb_026240_020 Hb_005730_110--Hb_026240_020 Hb_012404_020 Hb_012404_020 Hb_005730_110--Hb_012404_020 Hb_000418_170 Hb_000418_170 Hb_005730_110--Hb_000418_170 Hb_022092_110 Hb_022092_110 Hb_005730_110--Hb_022092_110 Hb_004592_010 Hb_004592_010 Hb_005730_110--Hb_004592_010 Hb_000199_040 Hb_000199_040 Hb_002053_180--Hb_000199_040 Hb_002053_180--Hb_006922_020 Hb_000836_090 Hb_000836_090 Hb_002053_180--Hb_000836_090 Hb_002053_180--Hb_002490_060 Hb_006922_020--Hb_007123_010 Hb_000103_370 Hb_000103_370 Hb_006922_020--Hb_000103_370 Hb_004228_070 Hb_004228_070 Hb_006922_020--Hb_004228_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0169383 2.444 10.8337 7.50794 0.0158546 0.016042
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0192299 0.0151314 0.0287974 1.8097 5.10457

CAGE analysis