Hb_004592_010

Information

Type transcription factor
Description TF Family: bZIP
Location Contig4592: 19603-23199
Sequence    

Annotation

kegg
ID rcu:RCOM_0816450
description Transcription factor RF2b, putative
nr
ID XP_012077996.1
description PREDICTED: transcription factor RF2b-like [Jatropha curcas]
swissprot
ID Q6S4P4
description Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=2
trembl
ID A0A067LMP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17296 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor rf2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43584: 19491-23520 , PASA_asmbl_43585: 22161-22403
cDNA
(Sanger)
(ID:Location)		 028_J01.ab1: 19565-20152 , 030_E17.ab1: 19563-21927

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004592_010 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b-like [Jatropha curcas]
2 Hb_019570_010 0.0865423658 - - lyase, putative [Ricinus communis]
3 Hb_003666_070 0.0924305465 - - PREDICTED: BTB/POZ domain-containing protein At5g66560 [Jatropha curcas]
4 Hb_005730_110 0.092582965 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
5 Hb_008304_010 0.0928675435 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
6 Hb_000732_220 0.0996674127 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
7 Hb_000359_180 0.1006225508 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005144_060 0.1026506024 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
9 Hb_000418_170 0.1031750886 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
10 Hb_000739_170 0.1054100442 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
11 Hb_004218_140 0.1055612331 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoform X3 [Jatropha curcas]
12 Hb_002805_180 0.1065374057 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005675_050 0.1076875279 - - alpha-glucosidase, putative [Ricinus communis]
14 Hb_000008_150 0.1084598632 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
15 Hb_000627_040 0.1100297129 - - leucine-rich repeat protein, putative [Ricinus communis]
16 Hb_004832_010 0.111386904 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001104_020 0.1120406707 - - DNA binding protein, putative [Ricinus communis]
18 Hb_002045_010 0.113079487 - - PREDICTED: F-box/LRR-repeat protein 17 [Jatropha curcas]
19 Hb_001488_420 0.1133001585 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
20 Hb_004602_010 0.1190833995 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]

Gene co-expression network

sample Hb_004592_010 Hb_004592_010 Hb_019570_010 Hb_019570_010 Hb_004592_010--Hb_019570_010 Hb_003666_070 Hb_003666_070 Hb_004592_010--Hb_003666_070 Hb_005730_110 Hb_005730_110 Hb_004592_010--Hb_005730_110 Hb_008304_010 Hb_008304_010 Hb_004592_010--Hb_008304_010 Hb_000732_220 Hb_000732_220 Hb_004592_010--Hb_000732_220 Hb_000359_180 Hb_000359_180 Hb_004592_010--Hb_000359_180 Hb_019570_010--Hb_000732_220 Hb_001104_020 Hb_001104_020 Hb_019570_010--Hb_001104_020 Hb_002805_180 Hb_002805_180 Hb_019570_010--Hb_002805_180 Hb_000008_150 Hb_000008_150 Hb_019570_010--Hb_000008_150 Hb_005144_060 Hb_005144_060 Hb_019570_010--Hb_005144_060 Hb_000120_340 Hb_000120_340 Hb_003666_070--Hb_000120_340 Hb_005675_050 Hb_005675_050 Hb_003666_070--Hb_005675_050 Hb_168918_010 Hb_168918_010 Hb_003666_070--Hb_168918_010 Hb_007632_160 Hb_007632_160 Hb_003666_070--Hb_007632_160 Hb_011671_050 Hb_011671_050 Hb_003666_070--Hb_011671_050 Hb_000627_040 Hb_000627_040 Hb_005730_110--Hb_000627_040 Hb_026240_020 Hb_026240_020 Hb_005730_110--Hb_026240_020 Hb_012404_020 Hb_012404_020 Hb_005730_110--Hb_012404_020 Hb_000418_170 Hb_000418_170 Hb_005730_110--Hb_000418_170 Hb_022092_110 Hb_022092_110 Hb_005730_110--Hb_022092_110 Hb_004602_010 Hb_004602_010 Hb_008304_010--Hb_004602_010 Hb_003938_230 Hb_003938_230 Hb_008304_010--Hb_003938_230 Hb_062807_010 Hb_062807_010 Hb_008304_010--Hb_062807_010 Hb_004218_140 Hb_004218_140 Hb_008304_010--Hb_004218_140 Hb_001488_420 Hb_001488_420 Hb_008304_010--Hb_001488_420 Hb_000732_220--Hb_001104_020 Hb_000152_120 Hb_000152_120 Hb_000732_220--Hb_000152_120 Hb_000732_220--Hb_000359_180 Hb_000732_220--Hb_002805_180 Hb_000359_180--Hb_002805_180 Hb_001310_060 Hb_001310_060 Hb_000359_180--Hb_001310_060 Hb_000077_300 Hb_000077_300 Hb_000359_180--Hb_000077_300 Hb_004832_010 Hb_004832_010 Hb_000359_180--Hb_004832_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.219926 1.41565 11.0991 8.1 0.0876625 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.032267 0.0599969 3.15445 5.20602

CAGE analysis