Hb_000152_120

Information

Type -
Description -
Location Contig152: 79847-81621
Sequence    

Annotation

kegg
ID rcu:RCOM_1498560
description alpha-l-fucosidase, putative (EC:3.2.1.51)
nr
ID XP_002510887.1
description alpha-l-fucosidase, putative [Ricinus communis]
swissprot
ID Q8GW72
description Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=2
trembl
ID B9R9L2
description Alpha-l-fucosidase, putative OS=Ricinus communis GN=RCOM_1498560 PE=4 SV=1
Gene Ontology
ID GO:0004560
description alpha-l-fucosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12953: 79874-81871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000152_120 0.0 - - alpha-l-fucosidase, putative [Ricinus communis]
2 Hb_001244_070 0.0805856561 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
3 Hb_001104_020 0.0854865419 - - DNA binding protein, putative [Ricinus communis]
4 Hb_000732_220 0.089996802 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
5 Hb_000951_090 0.0927449016 - - Oligopeptide transporter, putative [Ricinus communis]
6 Hb_020805_070 0.094211167 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
7 Hb_000337_030 0.0954804361 - - amino acid transporter, putative [Ricinus communis]
8 Hb_000880_040 0.1006025282 - - -
9 Hb_002851_070 0.1016810215 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
10 Hb_004162_320 0.1064688452 - - PREDICTED: uncharacterized protein LOC105628009 isoform X1 [Jatropha curcas]
11 Hb_001405_040 0.107425879 - - PREDICTED: 3-ketoacyl-CoA synthase 11-like [Jatropha curcas]
12 Hb_019570_010 0.1077608881 - - lyase, putative [Ricinus communis]
13 Hb_003506_010 0.1090028735 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
14 Hb_001135_010 0.1131415768 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
15 Hb_000416_090 0.1147898762 - - Aquaporin NIP1.1, putative [Ricinus communis]
16 Hb_005663_090 0.1153571422 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
17 Hb_005892_040 0.1169431121 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
18 Hb_015001_030 0.1183052398 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
19 Hb_093218_010 0.1189378325 - - hypothetical protein POPTR_0001s05220g [Populus trichocarpa]
20 Hb_000181_220 0.120072905 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000152_120 Hb_000152_120 Hb_001244_070 Hb_001244_070 Hb_000152_120--Hb_001244_070 Hb_001104_020 Hb_001104_020 Hb_000152_120--Hb_001104_020 Hb_000732_220 Hb_000732_220 Hb_000152_120--Hb_000732_220 Hb_000951_090 Hb_000951_090 Hb_000152_120--Hb_000951_090 Hb_020805_070 Hb_020805_070 Hb_000152_120--Hb_020805_070 Hb_000337_030 Hb_000337_030 Hb_000152_120--Hb_000337_030 Hb_000880_040 Hb_000880_040 Hb_001244_070--Hb_000880_040 Hb_000365_440 Hb_000365_440 Hb_001244_070--Hb_000365_440 Hb_001405_040 Hb_001405_040 Hb_001244_070--Hb_001405_040 Hb_004116_050 Hb_004116_050 Hb_001244_070--Hb_004116_050 Hb_001244_070--Hb_020805_070 Hb_001104_020--Hb_000732_220 Hb_093218_010 Hb_093218_010 Hb_001104_020--Hb_093218_010 Hb_005892_040 Hb_005892_040 Hb_001104_020--Hb_005892_040 Hb_001104_020--Hb_000951_090 Hb_019570_010 Hb_019570_010 Hb_001104_020--Hb_019570_010 Hb_000732_220--Hb_019570_010 Hb_000359_180 Hb_000359_180 Hb_000732_220--Hb_000359_180 Hb_002805_180 Hb_002805_180 Hb_000732_220--Hb_002805_180 Hb_004592_010 Hb_004592_010 Hb_000732_220--Hb_004592_010 Hb_000951_090--Hb_093218_010 Hb_029639_030 Hb_029639_030 Hb_000951_090--Hb_029639_030 Hb_000714_060 Hb_000714_060 Hb_000951_090--Hb_000714_060 Hb_000951_090--Hb_002805_180 Hb_020805_070--Hb_001405_040 Hb_004162_320 Hb_004162_320 Hb_020805_070--Hb_004162_320 Hb_003506_010 Hb_003506_010 Hb_020805_070--Hb_003506_010 Hb_020805_070--Hb_005892_040 Hb_002078_320 Hb_002078_320 Hb_020805_070--Hb_002078_320 Hb_000901_010 Hb_000901_010 Hb_020805_070--Hb_000901_010 Hb_019278_010 Hb_019278_010 Hb_000337_030--Hb_019278_010 Hb_005663_090 Hb_005663_090 Hb_000337_030--Hb_005663_090 Hb_000337_030--Hb_001244_070 Hb_000181_220 Hb_000181_220 Hb_000337_030--Hb_000181_220 Hb_170023_010 Hb_170023_010 Hb_000337_030--Hb_170023_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.260049 4.32854 35.7988 28.4048 0.118492 0.0270672
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0616536 0.0242524 0 25.3206 27.4618

CAGE analysis