Hb_170023_010

Information

Type -
Description -
Location Contig170023: 31-658
Sequence    

Annotation

kegg
ID pxb:103962969
description proline-rich receptor-like protein kinase PERK1
nr
ID KCW82440.1
description hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID A0A059CWY8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03837 PE=3 SV=1
Gene Ontology
ID GO:0016301
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_170023_010 0.0 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
2 Hb_004324_320 0.0566559229 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
3 Hb_019278_010 0.0747873896 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
4 Hb_000365_440 0.0839721019 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
5 Hb_000880_040 0.0907268783 - - -
6 Hb_000087_120 0.0919767696 - - AMP dependent CoA ligase, putative [Ricinus communis]
7 Hb_001244_070 0.0980290388 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
8 Hb_000260_750 0.0993928119 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
9 Hb_000072_110 0.1053471263 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
10 Hb_004709_030 0.1098063822 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
11 Hb_000380_140 0.1110997947 - - PREDICTED: uncharacterized protein LOC105628069 [Jatropha curcas]
12 Hb_000337_030 0.1112494237 - - amino acid transporter, putative [Ricinus communis]
13 Hb_020805_070 0.1123699506 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
14 Hb_002379_060 0.1162339793 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
15 Hb_017098_050 0.1185918429 - - hypothetical protein POPTR_0001s03540g [Populus trichocarpa]
16 Hb_000147_020 0.1186174395 - - PREDICTED: uncharacterized protein LOC105638303 [Jatropha curcas]
17 Hb_001186_120 0.121482187 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
18 Hb_002701_060 0.1217626215 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006970_120 0.1220384608 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007850_110 0.1235671608 - - MADS-box transcription factor 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_170023_010 Hb_170023_010 Hb_004324_320 Hb_004324_320 Hb_170023_010--Hb_004324_320 Hb_019278_010 Hb_019278_010 Hb_170023_010--Hb_019278_010 Hb_000365_440 Hb_000365_440 Hb_170023_010--Hb_000365_440 Hb_000880_040 Hb_000880_040 Hb_170023_010--Hb_000880_040 Hb_000087_120 Hb_000087_120 Hb_170023_010--Hb_000087_120 Hb_001244_070 Hb_001244_070 Hb_170023_010--Hb_001244_070 Hb_000147_020 Hb_000147_020 Hb_004324_320--Hb_000147_020 Hb_000260_750 Hb_000260_750 Hb_004324_320--Hb_000260_750 Hb_000072_110 Hb_000072_110 Hb_004324_320--Hb_000072_110 Hb_004324_320--Hb_000880_040 Hb_004324_320--Hb_000365_440 Hb_019278_010--Hb_000087_120 Hb_000337_030 Hb_000337_030 Hb_019278_010--Hb_000337_030 Hb_004709_030 Hb_004709_030 Hb_019278_010--Hb_004709_030 Hb_019278_010--Hb_000365_440 Hb_002379_060 Hb_002379_060 Hb_019278_010--Hb_002379_060 Hb_000365_440--Hb_004709_030 Hb_000365_440--Hb_000880_040 Hb_000365_440--Hb_001244_070 Hb_005050_030 Hb_005050_030 Hb_000365_440--Hb_005050_030 Hb_009693_010 Hb_009693_010 Hb_000880_040--Hb_009693_010 Hb_000880_040--Hb_000260_750 Hb_000880_040--Hb_001244_070 Hb_002851_070 Hb_002851_070 Hb_000880_040--Hb_002851_070 Hb_000087_120--Hb_002379_060 Hb_000087_120--Hb_004709_030 Hb_000087_120--Hb_004324_320 Hb_000215_130 Hb_000215_130 Hb_000087_120--Hb_000215_130 Hb_000152_120 Hb_000152_120 Hb_001244_070--Hb_000152_120 Hb_001405_040 Hb_001405_040 Hb_001244_070--Hb_001405_040 Hb_004116_050 Hb_004116_050 Hb_001244_070--Hb_004116_050 Hb_020805_070 Hb_020805_070 Hb_001244_070--Hb_020805_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.806788 5.06116 2.80346 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.72413 6.12628

CAGE analysis