Hb_000880_040

Information

Type -
Description -
Location Contig880: 68076-68695
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61409: 68078-68513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000880_040 0.0 - - -
2 Hb_009693_010 0.067983667 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
3 Hb_000260_750 0.073692523 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
4 Hb_000365_440 0.079539945 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
5 Hb_001244_070 0.0826922367 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
6 Hb_170023_010 0.0907268783 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
7 Hb_002851_070 0.098866337 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
8 Hb_000152_120 0.1006025282 - - alpha-l-fucosidase, putative [Ricinus communis]
9 Hb_001186_120 0.1009740621 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
10 Hb_004324_320 0.1036132006 - - PREDICTED: probable inactive receptor kinase At4g23740 [Jatropha curcas]
11 Hb_001500_080 0.1049006764 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
12 Hb_009102_010 0.1095702024 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_020805_070 0.1100348133 - - PREDICTED: MLO protein homolog 1-like [Jatropha curcas]
14 Hb_003592_060 0.1190636843 - - hypothetical protein F383_11017 [Gossypium arboreum]
15 Hb_006266_010 0.1209035595 - - unnamed protein product [Vitis vinifera]
16 Hb_019278_010 0.1235409038 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
17 Hb_004709_030 0.1248387857 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
18 Hb_000215_130 0.1254817734 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
19 Hb_000189_160 0.1311953476 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
20 Hb_023771_030 0.1319142938 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000880_040 Hb_000880_040 Hb_009693_010 Hb_009693_010 Hb_000880_040--Hb_009693_010 Hb_000260_750 Hb_000260_750 Hb_000880_040--Hb_000260_750 Hb_000365_440 Hb_000365_440 Hb_000880_040--Hb_000365_440 Hb_001244_070 Hb_001244_070 Hb_000880_040--Hb_001244_070 Hb_170023_010 Hb_170023_010 Hb_000880_040--Hb_170023_010 Hb_002851_070 Hb_002851_070 Hb_000880_040--Hb_002851_070 Hb_001500_080 Hb_001500_080 Hb_009693_010--Hb_001500_080 Hb_003592_060 Hb_003592_060 Hb_009693_010--Hb_003592_060 Hb_009693_010--Hb_002851_070 Hb_006266_010 Hb_006266_010 Hb_009693_010--Hb_006266_010 Hb_009693_010--Hb_000365_440 Hb_004324_320 Hb_004324_320 Hb_000260_750--Hb_004324_320 Hb_009102_010 Hb_009102_010 Hb_000260_750--Hb_009102_010 Hb_078582_010 Hb_078582_010 Hb_000260_750--Hb_078582_010 Hb_002601_140 Hb_002601_140 Hb_000260_750--Hb_002601_140 Hb_002078_320 Hb_002078_320 Hb_000260_750--Hb_002078_320 Hb_004709_030 Hb_004709_030 Hb_000365_440--Hb_004709_030 Hb_000365_440--Hb_001244_070 Hb_000365_440--Hb_170023_010 Hb_005050_030 Hb_005050_030 Hb_000365_440--Hb_005050_030 Hb_019278_010 Hb_019278_010 Hb_000365_440--Hb_019278_010 Hb_000152_120 Hb_000152_120 Hb_001244_070--Hb_000152_120 Hb_001405_040 Hb_001405_040 Hb_001244_070--Hb_001405_040 Hb_004116_050 Hb_004116_050 Hb_001244_070--Hb_004116_050 Hb_020805_070 Hb_020805_070 Hb_001244_070--Hb_020805_070 Hb_170023_010--Hb_004324_320 Hb_170023_010--Hb_019278_010 Hb_000087_120 Hb_000087_120 Hb_170023_010--Hb_000087_120 Hb_170023_010--Hb_001244_070 Hb_023771_030 Hb_023771_030 Hb_002851_070--Hb_023771_030 Hb_002851_070--Hb_000152_120 Hb_004446_060 Hb_004446_060 Hb_002851_070--Hb_004446_060 Hb_007007_130 Hb_007007_130 Hb_002851_070--Hb_007007_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.724504 5.76409 2.55991 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.54732 4.10525

CAGE analysis