Hb_003592_060

Information

Type -
Description -
Location Contig3592: 57695-59364
Sequence    

Annotation

kegg
ID tcc:TCM_002676
description Lactoylglutathione lyase / glyoxalase I family protein
nr
ID KHG11806.1
description hypothetical protein F383_11017 [Gossypium arboreum]
swissprot
ID Q9LV66
description Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1
trembl
ID A0A0B0NL78
description Uncharacterized protein OS=Gossypium arboreum GN=F383_11017 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37077: 57436-59488 , PASA_asmbl_37078: 58536-59020
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003592_060 0.0 - - hypothetical protein F383_11017 [Gossypium arboreum]
2 Hb_006266_010 0.0598061051 - - unnamed protein product [Vitis vinifera]
3 Hb_005743_010 0.0770488159 - - RING/U-box superfamily protein, putative [Theobroma cacao]
4 Hb_068804_070 0.0937442312 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
5 Hb_009693_010 0.0954601761 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
6 Hb_002217_060 0.1014897846 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
7 Hb_000018_120 0.1056607271 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_002851_070 0.1135104068 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
9 Hb_000880_040 0.1190636843 - - -
10 Hb_000934_240 0.120453436 - - PREDICTED: peroxidase 13 [Jatropha curcas]
11 Hb_006615_220 0.1205662073 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
12 Hb_023771_030 0.1214573143 - - unnamed protein product [Vitis vinifera]
13 Hb_001500_080 0.124882431 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
14 Hb_000152_770 0.1260090397 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
15 Hb_000941_010 0.1264478532 - - hypothetical protein RCOM_0504460 [Ricinus communis]
16 Hb_001186_120 0.1268313319 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
17 Hb_001284_070 0.1293919759 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001310_060 0.1311422917 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_004832_010 0.132439391 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001226_100 0.1338598197 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003592_060 Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_003592_060--Hb_006266_010 Hb_005743_010 Hb_005743_010 Hb_003592_060--Hb_005743_010 Hb_068804_070 Hb_068804_070 Hb_003592_060--Hb_068804_070 Hb_009693_010 Hb_009693_010 Hb_003592_060--Hb_009693_010 Hb_002217_060 Hb_002217_060 Hb_003592_060--Hb_002217_060 Hb_000018_120 Hb_000018_120 Hb_003592_060--Hb_000018_120 Hb_006266_010--Hb_005743_010 Hb_006266_010--Hb_009693_010 Hb_006615_220 Hb_006615_220 Hb_006266_010--Hb_006615_220 Hb_137272_010 Hb_137272_010 Hb_006266_010--Hb_137272_010 Hb_006266_010--Hb_068804_070 Hb_005743_010--Hb_068804_070 Hb_005743_010--Hb_006615_220 Hb_007643_060 Hb_007643_060 Hb_005743_010--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_005743_010--Hb_007951_020 Hb_000471_030 Hb_000471_030 Hb_068804_070--Hb_000471_030 Hb_004316_080 Hb_004316_080 Hb_068804_070--Hb_004316_080 Hb_068804_070--Hb_002217_060 Hb_000880_040 Hb_000880_040 Hb_009693_010--Hb_000880_040 Hb_001500_080 Hb_001500_080 Hb_009693_010--Hb_001500_080 Hb_002851_070 Hb_002851_070 Hb_009693_010--Hb_002851_070 Hb_000365_440 Hb_000365_440 Hb_009693_010--Hb_000365_440 Hb_023771_030 Hb_023771_030 Hb_002217_060--Hb_023771_030 Hb_001284_070 Hb_001284_070 Hb_002217_060--Hb_001284_070 Hb_020273_010 Hb_020273_010 Hb_002217_060--Hb_020273_010 Hb_001310_060 Hb_001310_060 Hb_002217_060--Hb_001310_060 Hb_002217_060--Hb_002851_070 Hb_000696_250 Hb_000696_250 Hb_000018_120--Hb_000696_250 Hb_001832_110 Hb_001832_110 Hb_000018_120--Hb_001832_110 Hb_000941_010 Hb_000941_010 Hb_000018_120--Hb_000941_010 Hb_000336_280 Hb_000336_280 Hb_000018_120--Hb_000336_280 Hb_022092_050 Hb_022092_050 Hb_000018_120--Hb_022092_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.19322 52.0642 15.1526 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0631893 0.0496888 0 25.8414 17.6395

CAGE analysis