Hb_023771_030

Information

Type -
Description -
Location Contig23771: 25558-27059
Sequence    

Annotation

kegg
ID vvi:100252918
description tropinone reductase homolog
nr
ID CBI30506.3
description unnamed protein product [Vitis vinifera]
swissprot
ID P50162
description Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1
trembl
ID D7THJ0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g00920 PE=3 SV=1
Gene Ontology
ID GO:0016491
description tropinone reductase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24978: 25576-26131
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023771_030 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002851_070 0.0627409249 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
3 Hb_006916_130 0.0827303968 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
4 Hb_002217_060 0.0980730779 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
5 Hb_012813_020 0.1023146658 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like isoform X2 [Jatropha curcas]
6 Hb_009693_010 0.1042509376 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
7 Hb_003592_060 0.1214573143 - - hypothetical protein F383_11017 [Gossypium arboreum]
8 Hb_020273_010 0.1258040256 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
9 Hb_007007_130 0.1264193289 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
10 Hb_017358_050 0.128495787 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
11 Hb_004446_060 0.1309190259 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_000880_040 0.1319142938 - - -
13 Hb_001310_060 0.1322381935 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_000732_220 0.1340328239 - - PREDICTED: importin subunit alpha-5 [Jatropha curcas]
15 Hb_004832_010 0.1355867793 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000359_180 0.1371998364 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000152_120 0.1384244632 - - alpha-l-fucosidase, putative [Ricinus communis]
18 Hb_001244_070 0.1386928515 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
19 Hb_001284_070 0.1396300023 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005050_030 0.1396724553 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_023771_030 Hb_023771_030 Hb_002851_070 Hb_002851_070 Hb_023771_030--Hb_002851_070 Hb_006916_130 Hb_006916_130 Hb_023771_030--Hb_006916_130 Hb_002217_060 Hb_002217_060 Hb_023771_030--Hb_002217_060 Hb_012813_020 Hb_012813_020 Hb_023771_030--Hb_012813_020 Hb_009693_010 Hb_009693_010 Hb_023771_030--Hb_009693_010 Hb_003592_060 Hb_003592_060 Hb_023771_030--Hb_003592_060 Hb_002851_070--Hb_009693_010 Hb_000880_040 Hb_000880_040 Hb_002851_070--Hb_000880_040 Hb_000152_120 Hb_000152_120 Hb_002851_070--Hb_000152_120 Hb_004446_060 Hb_004446_060 Hb_002851_070--Hb_004446_060 Hb_007007_130 Hb_007007_130 Hb_002851_070--Hb_007007_130 Hb_006916_130--Hb_012813_020 Hb_006916_130--Hb_002851_070 Hb_005050_030 Hb_005050_030 Hb_006916_130--Hb_005050_030 Hb_002151_150 Hb_002151_150 Hb_006916_130--Hb_002151_150 Hb_017358_050 Hb_017358_050 Hb_006916_130--Hb_017358_050 Hb_001284_070 Hb_001284_070 Hb_002217_060--Hb_001284_070 Hb_002217_060--Hb_003592_060 Hb_020273_010 Hb_020273_010 Hb_002217_060--Hb_020273_010 Hb_001310_060 Hb_001310_060 Hb_002217_060--Hb_001310_060 Hb_002217_060--Hb_002851_070 Hb_012813_020--Hb_020273_010 Hb_001369_460 Hb_001369_460 Hb_012813_020--Hb_001369_460 Hb_012813_020--Hb_002217_060 Hb_000205_180 Hb_000205_180 Hb_012813_020--Hb_000205_180 Hb_009693_010--Hb_000880_040 Hb_001500_080 Hb_001500_080 Hb_009693_010--Hb_001500_080 Hb_009693_010--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_009693_010--Hb_006266_010 Hb_000365_440 Hb_000365_440 Hb_009693_010--Hb_000365_440 Hb_003592_060--Hb_006266_010 Hb_005743_010 Hb_005743_010 Hb_003592_060--Hb_005743_010 Hb_068804_070 Hb_068804_070 Hb_003592_060--Hb_068804_070 Hb_000018_120 Hb_000018_120 Hb_003592_060--Hb_000018_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.119954 4.56252 2.08386 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0483862 0 0 2.26306 1.95146

CAGE analysis