Hb_012813_020

Information

Type -
Description -
Location Contig12813: 28236-30896
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05780g
description hypothetical protein
nr
ID XP_012086237.1
description PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like isoform X2 [Jatropha curcas]
swissprot
ID P52408
description Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1
trembl
ID Q944B1
description Beta-1,3-glucanase OS=Prunus persica GN=Gns3 PE=3 SV=1
Gene Ontology
ID GO:0004553
description glucan endo- -beta- basic isoform-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08691: 28249-30953 , PASA_asmbl_08692: 28331-30932
cDNA
(Sanger)
(ID:Location)		 025_N11.ab1: 28723-30951 , 043_G14.ab1: 28704-30951

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012813_020 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like isoform X2 [Jatropha curcas]
2 Hb_023771_030 0.1023146658 - - unnamed protein product [Vitis vinifera]
3 Hb_006916_130 0.1027559799 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
4 Hb_020273_010 0.119663319 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
5 Hb_001369_460 0.1282979164 - - vacuolar invertase [Manihot esculenta]
6 Hb_002217_060 0.1428637127 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
7 Hb_000205_180 0.1438050508 - - lipoxygenase, putative [Ricinus communis]
8 Hb_002851_070 0.1486703723 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]
9 Hb_009693_010 0.1534067222 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
10 Hb_174168_010 0.1551293348 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_002757_010 0.156815327 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
12 Hb_005050_030 0.1577116668 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
13 Hb_001310_060 0.160138152 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
14 Hb_040718_010 0.1601495921 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
15 Hb_017358_050 0.1667046169 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
16 Hb_003592_060 0.1680430682 - - hypothetical protein F383_11017 [Gossypium arboreum]
17 Hb_007007_130 0.1687497662 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
18 Hb_002081_060 0.1688514694 - - cyclin d, putative [Ricinus communis]
19 Hb_007520_050 0.1709361457 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
20 Hb_000077_300 0.1712279413 - - PREDICTED: expansin-B3-like [Jatropha curcas]

Gene co-expression network

sample Hb_012813_020 Hb_012813_020 Hb_023771_030 Hb_023771_030 Hb_012813_020--Hb_023771_030 Hb_006916_130 Hb_006916_130 Hb_012813_020--Hb_006916_130 Hb_020273_010 Hb_020273_010 Hb_012813_020--Hb_020273_010 Hb_001369_460 Hb_001369_460 Hb_012813_020--Hb_001369_460 Hb_002217_060 Hb_002217_060 Hb_012813_020--Hb_002217_060 Hb_000205_180 Hb_000205_180 Hb_012813_020--Hb_000205_180 Hb_002851_070 Hb_002851_070 Hb_023771_030--Hb_002851_070 Hb_023771_030--Hb_006916_130 Hb_023771_030--Hb_002217_060 Hb_009693_010 Hb_009693_010 Hb_023771_030--Hb_009693_010 Hb_003592_060 Hb_003592_060 Hb_023771_030--Hb_003592_060 Hb_006916_130--Hb_002851_070 Hb_005050_030 Hb_005050_030 Hb_006916_130--Hb_005050_030 Hb_002151_150 Hb_002151_150 Hb_006916_130--Hb_002151_150 Hb_017358_050 Hb_017358_050 Hb_006916_130--Hb_017358_050 Hb_020273_010--Hb_002217_060 Hb_020273_010--Hb_000205_180 Hb_001310_060 Hb_001310_060 Hb_020273_010--Hb_001310_060 Hb_020273_010--Hb_023771_030 Hb_001369_550 Hb_001369_550 Hb_020273_010--Hb_001369_550 Hb_174168_010 Hb_174168_010 Hb_001369_460--Hb_174168_010 Hb_040718_010 Hb_040718_010 Hb_001369_460--Hb_040718_010 Hb_007520_050 Hb_007520_050 Hb_001369_460--Hb_007520_050 Hb_000947_010 Hb_000947_010 Hb_001369_460--Hb_000947_010 Hb_006938_060 Hb_006938_060 Hb_001369_460--Hb_006938_060 Hb_003043_130 Hb_003043_130 Hb_001369_460--Hb_003043_130 Hb_001284_070 Hb_001284_070 Hb_002217_060--Hb_001284_070 Hb_002217_060--Hb_003592_060 Hb_002217_060--Hb_001310_060 Hb_002217_060--Hb_002851_070 Hb_003626_020 Hb_003626_020 Hb_000205_180--Hb_003626_020 Hb_000205_180--Hb_001369_550 Hb_000205_180--Hb_001310_060 Hb_000205_180--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_000205_180--Hb_002757_010 Hb_002700_030 Hb_002700_030 Hb_000205_180--Hb_002700_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.213949 72.2236 21.8856 0 0.0148405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73724 0.052565 0 23.8343 25.1192

CAGE analysis