Hb_007520_050

Information

Type transcription factor
Description TF Family: MYB
Location Contig7520: 51269-52591
Sequence    

Annotation

kegg
ID vvi:100244963
description transcription factor WER
nr
ID XP_012080531.1
description PREDICTED: transcription factor WER-like [Jatropha curcas]
swissprot
ID Q9SEI0
description Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1
trembl
ID A0A067K7V1
description MYB family protein OS=Jatropha curcas GN=JCGZ_11479 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor wer-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56875: 51243-52528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007520_050 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
2 Hb_174168_010 0.0856070774 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_003101_020 0.0981275091 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
4 Hb_001439_050 0.0984612081 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
5 Hb_062807_010 0.1053298925 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
6 Hb_001369_460 0.1074339762 - - vacuolar invertase [Manihot esculenta]
7 Hb_005305_160 0.1173351281 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002066_100 0.1220260393 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
9 Hb_002391_030 0.1229878422 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]
10 Hb_108576_020 0.1251828635 - - conserved hypothetical protein [Ricinus communis]
11 Hb_174899_010 0.1262842428 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
12 Hb_000958_060 0.1274980377 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003894_170 0.1279129742 transcription factor TF Family: LOB hypothetical protein CICLE_v10021992mg [Citrus clementina]
14 Hb_011671_050 0.1286649406 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
15 Hb_001348_040 0.1301464551 - - hypothetical protein VITISV_006651 [Vitis vinifera]
16 Hb_024494_010 0.1312378996 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
17 Hb_000109_140 0.131481813 - - hypothetical protein CICLE_v100314482mg, partial [Citrus clementina]
18 Hb_001386_060 0.1330875376 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
19 Hb_002301_120 0.1332951954 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
20 Hb_001511_210 0.1345507145 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007520_050 Hb_007520_050 Hb_174168_010 Hb_174168_010 Hb_007520_050--Hb_174168_010 Hb_003101_020 Hb_003101_020 Hb_007520_050--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_007520_050--Hb_001439_050 Hb_062807_010 Hb_062807_010 Hb_007520_050--Hb_062807_010 Hb_001369_460 Hb_001369_460 Hb_007520_050--Hb_001369_460 Hb_005305_160 Hb_005305_160 Hb_007520_050--Hb_005305_160 Hb_174168_010--Hb_001369_460 Hb_000947_010 Hb_000947_010 Hb_174168_010--Hb_000947_010 Hb_003043_130 Hb_003043_130 Hb_174168_010--Hb_003043_130 Hb_002391_030 Hb_002391_030 Hb_174168_010--Hb_002391_030 Hb_040718_010 Hb_040718_010 Hb_174168_010--Hb_040718_010 Hb_003101_020--Hb_001439_050 Hb_108576_020 Hb_108576_020 Hb_003101_020--Hb_108576_020 Hb_003101_020--Hb_062807_010 Hb_002518_040 Hb_002518_040 Hb_003101_020--Hb_002518_040 Hb_002066_100 Hb_002066_100 Hb_003101_020--Hb_002066_100 Hb_000722_030 Hb_000722_030 Hb_003101_020--Hb_000722_030 Hb_001439_050--Hb_062807_010 Hb_001439_050--Hb_108576_020 Hb_001439_050--Hb_002518_040 Hb_007313_030 Hb_007313_030 Hb_001439_050--Hb_007313_030 Hb_011671_050 Hb_011671_050 Hb_001439_050--Hb_011671_050 Hb_062807_010--Hb_108576_020 Hb_004602_010 Hb_004602_010 Hb_062807_010--Hb_004602_010 Hb_008304_010 Hb_008304_010 Hb_062807_010--Hb_008304_010 Hb_062807_010--Hb_007313_030 Hb_001369_460--Hb_040718_010 Hb_001369_460--Hb_000947_010 Hb_006938_060 Hb_006938_060 Hb_001369_460--Hb_006938_060 Hb_001369_460--Hb_003043_130 Hb_002757_010 Hb_002757_010 Hb_005305_160--Hb_002757_010 Hb_000077_300 Hb_000077_300 Hb_005305_160--Hb_000077_300 Hb_005116_120 Hb_005116_120 Hb_005305_160--Hb_005116_120 Hb_005305_160--Hb_011671_050 Hb_000297_210 Hb_000297_210 Hb_005305_160--Hb_000297_210 Hb_005305_160--Hb_001439_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0641465 5.61087 2.19565 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0690903 0 0.732884 2.44089

CAGE analysis