Hb_001369_460

Information

Type -
Description -
Location Contig1369: 388694-392535
Sequence    

Annotation

kegg
ID rcu:RCOM_1500230
description Beta-fructofuranosidase, soluble isoenzyme I precursor, putative (EC:3.2.1.26)
nr
ID AFH77956.1
description vacuolar invertase [Manihot esculenta]
swissprot
ID P80065
description Beta-fructofuranosidase, soluble isoenzyme I OS=Daucus carota GN=INV*DC4 PE=1 SV=2
trembl
ID I0CL56
description Vacuolar invertase OS=Manihot esculenta GN=VINV3 PE=2 SV=1
Gene Ontology
ID GO:0004575
description beta- soluble isoenzyme i-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10186: 388987-389147 , PASA_asmbl_10187: 391232-392533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_460 0.0 - - vacuolar invertase [Manihot esculenta]
2 Hb_174168_010 0.077471542 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
3 Hb_040718_010 0.0968461303 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
4 Hb_007520_050 0.1074339762 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
5 Hb_000947_010 0.1154077195 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
6 Hb_006938_060 0.1216648945 - - nutrient reservoir, putative [Ricinus communis]
7 Hb_003043_130 0.1230200573 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
8 Hb_145188_010 0.1263694958 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
9 Hb_000958_060 0.1279326796 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005050_030 0.127937746 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
11 Hb_012813_020 0.1282979164 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like isoform X2 [Jatropha curcas]
12 Hb_008705_030 0.1300336262 - - hypothetical protein JCGZ_13017 [Jatropha curcas]
13 Hb_028707_120 0.1308459709 - - PREDICTED: uncharacterized protein LOC105645799 isoform X2 [Jatropha curcas]
14 Hb_009693_010 0.1438060346 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
15 Hb_003101_020 0.146923634 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
16 Hb_006267_040 0.1469769896 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
17 Hb_000866_060 0.1542123258 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
18 Hb_020273_010 0.1548441281 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
19 Hb_174899_010 0.1554226032 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
20 Hb_108576_020 0.1570304587 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001369_460 Hb_001369_460 Hb_174168_010 Hb_174168_010 Hb_001369_460--Hb_174168_010 Hb_040718_010 Hb_040718_010 Hb_001369_460--Hb_040718_010 Hb_007520_050 Hb_007520_050 Hb_001369_460--Hb_007520_050 Hb_000947_010 Hb_000947_010 Hb_001369_460--Hb_000947_010 Hb_006938_060 Hb_006938_060 Hb_001369_460--Hb_006938_060 Hb_003043_130 Hb_003043_130 Hb_001369_460--Hb_003043_130 Hb_174168_010--Hb_007520_050 Hb_174168_010--Hb_000947_010 Hb_174168_010--Hb_003043_130 Hb_002391_030 Hb_002391_030 Hb_174168_010--Hb_002391_030 Hb_174168_010--Hb_040718_010 Hb_040718_010--Hb_006938_060 Hb_005050_030 Hb_005050_030 Hb_040718_010--Hb_005050_030 Hb_002151_150 Hb_002151_150 Hb_040718_010--Hb_002151_150 Hb_040718_010--Hb_000947_010 Hb_003101_020 Hb_003101_020 Hb_007520_050--Hb_003101_020 Hb_001439_050 Hb_001439_050 Hb_007520_050--Hb_001439_050 Hb_062807_010 Hb_062807_010 Hb_007520_050--Hb_062807_010 Hb_005305_160 Hb_005305_160 Hb_007520_050--Hb_005305_160 Hb_000947_010--Hb_003043_130 Hb_005575_010 Hb_005575_010 Hb_000947_010--Hb_005575_010 Hb_005181_190 Hb_005181_190 Hb_000947_010--Hb_005181_190 Hb_067558_010 Hb_067558_010 Hb_000947_010--Hb_067558_010 Hb_000866_060 Hb_000866_060 Hb_000947_010--Hb_000866_060 Hb_176680_010 Hb_176680_010 Hb_006938_060--Hb_176680_010 Hb_001409_080 Hb_001409_080 Hb_006938_060--Hb_001409_080 Hb_006938_060--Hb_174168_010 Hb_006938_060--Hb_000866_060 Hb_006267_040 Hb_006267_040 Hb_006938_060--Hb_006267_040 Hb_003043_130--Hb_000866_060 Hb_003453_060 Hb_003453_060 Hb_003043_130--Hb_003453_060 Hb_003043_130--Hb_005575_010 Hb_000759_040 Hb_000759_040 Hb_003043_130--Hb_000759_040 Hb_000239_050 Hb_000239_050 Hb_003043_130--Hb_000239_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0092806 0.308047 26.6868 6.77783 0 0.00886476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0843329 0.0995356 0.0630177 5.43528 13.3107

CAGE analysis