Hb_003043_130

Information

Type transcription factor
Description TF Family: ERF
Location Contig3043: 170536-171543
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa025804mg
description hypothetical protein
nr
ID XP_012086774.1
description PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
swissprot
ID Q9SUQ2
description Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1
trembl
ID A0A067JN86
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20493 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor crf2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32098: 171934-172239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003043_130 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF2-like [Jatropha curcas]
2 Hb_000947_010 0.0616145762 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
3 Hb_000866_060 0.088244129 - - putative glycerol-3-phosphate acyltransferase [Vernicia fordii]
4 Hb_003453_060 0.0895818273 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
5 Hb_005575_010 0.0922154328 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
6 Hb_000759_040 0.0941480345 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
7 Hb_000239_050 0.094414871 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
8 Hb_174168_010 0.0944880365 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
9 Hb_007545_070 0.0958395001 transcription factor TF Family: MYB PREDICTED: myb-related protein 306 [Populus euphratica]
10 Hb_006267_040 0.1025645968 - - PREDICTED: ABC transporter G family member 32 isoform X1 [Jatropha curcas]
11 Hb_015044_010 0.1027562544 - - hypothetical protein JCGZ_25130 [Jatropha curcas]
12 Hb_005892_050 0.1037186158 - - PREDICTED: uncharacterized protein LOC105632175 [Jatropha curcas]
13 Hb_006618_110 0.1055622777 - - -
14 Hb_174899_010 0.1060063993 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
15 Hb_004602_010 0.1065394702 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
16 Hb_003101_020 0.1082215481 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
17 Hb_078582_010 0.1108352346 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
18 Hb_001958_030 0.1130821913 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
19 Hb_003937_010 0.1168819104 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
20 Hb_002391_030 0.1169805333 - - hypothetical protein CISIN_1g020187mg [Citrus sinensis]

Gene co-expression network

sample Hb_003043_130 Hb_003043_130 Hb_000947_010 Hb_000947_010 Hb_003043_130--Hb_000947_010 Hb_000866_060 Hb_000866_060 Hb_003043_130--Hb_000866_060 Hb_003453_060 Hb_003453_060 Hb_003043_130--Hb_003453_060 Hb_005575_010 Hb_005575_010 Hb_003043_130--Hb_005575_010 Hb_000759_040 Hb_000759_040 Hb_003043_130--Hb_000759_040 Hb_000239_050 Hb_000239_050 Hb_003043_130--Hb_000239_050 Hb_000947_010--Hb_005575_010 Hb_174168_010 Hb_174168_010 Hb_000947_010--Hb_174168_010 Hb_005181_190 Hb_005181_190 Hb_000947_010--Hb_005181_190 Hb_067558_010 Hb_067558_010 Hb_000947_010--Hb_067558_010 Hb_000947_010--Hb_000866_060 Hb_006267_040 Hb_006267_040 Hb_000866_060--Hb_006267_040 Hb_127263_010 Hb_127263_010 Hb_000866_060--Hb_127263_010 Hb_000866_060--Hb_000239_050 Hb_015044_010 Hb_015044_010 Hb_000866_060--Hb_015044_010 Hb_001409_080 Hb_001409_080 Hb_000866_060--Hb_001409_080 Hb_000300_110 Hb_000300_110 Hb_000866_060--Hb_000300_110 Hb_003453_060--Hb_005575_010 Hb_078582_010 Hb_078582_010 Hb_003453_060--Hb_078582_010 Hb_002025_290 Hb_002025_290 Hb_003453_060--Hb_002025_290 Hb_001544_060 Hb_001544_060 Hb_003453_060--Hb_001544_060 Hb_003119_130 Hb_003119_130 Hb_003453_060--Hb_003119_130 Hb_005575_010--Hb_002025_290 Hb_005575_010--Hb_078582_010 Hb_005575_010--Hb_003119_130 Hb_005892_050 Hb_005892_050 Hb_000759_040--Hb_005892_050 Hb_004602_010 Hb_004602_010 Hb_000759_040--Hb_004602_010 Hb_000023_130 Hb_000023_130 Hb_000759_040--Hb_000023_130 Hb_004855_080 Hb_004855_080 Hb_000759_040--Hb_004855_080 Hb_001488_420 Hb_001488_420 Hb_000759_040--Hb_001488_420 Hb_006618_110 Hb_006618_110 Hb_000759_040--Hb_006618_110 Hb_000239_050--Hb_127263_010 Hb_000239_050--Hb_000300_110 Hb_000041_210 Hb_000041_210 Hb_000239_050--Hb_000041_210 Hb_007545_070 Hb_007545_070 Hb_000239_050--Hb_007545_070 Hb_000424_130 Hb_000424_130 Hb_000239_050--Hb_000424_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0439488 0.598179 0.178947 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0952027 0.403895

CAGE analysis