Hb_003119_130

Information

Type -
Description -
Location Contig3119: 84638-88748
Sequence    

Annotation

kegg
ID pop:POPTR_0017s07770g
description POPTRDRAFT_1104883; hypothetical protein
nr
ID XP_002323971.1
description hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
swissprot
ID Q0WUA3
description 1,4-dihydroxy-2-naphthoate polyprenyltransferase, chloroplastic OS=Arabidopsis thaliana GN=ABC4 PE=1 SV=2
trembl
ID A9PEJ4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s07770g PE=2 SV=1
Gene Ontology
ID GO:0016021
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32978: 84657-87610 , PASA_asmbl_32979: 85608-87019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003119_130 0.0 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
2 Hb_078582_010 0.097242901 - - hypothetical protein POPTR_0005s01620g [Populus trichocarpa]
3 Hb_016687_010 0.0982920385 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
4 Hb_003453_060 0.0991090404 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]
5 Hb_000175_200 0.0991406492 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001172_150 0.0992631085 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
7 Hb_005575_010 0.1041286717 - - hypothetical protein POPTR_0004s02560g [Populus trichocarpa]
8 Hb_000212_270 0.1050499474 - - calreticulin, putative [Ricinus communis]
9 Hb_000697_020 0.1058593866 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
10 Hb_003141_060 0.106288939 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
11 Hb_000037_200 0.1117920213 - - RNA binding protein, putative [Ricinus communis]
12 Hb_002890_160 0.1120109834 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
13 Hb_000483_430 0.1146912275 - - -
14 Hb_008878_020 0.1203536653 - - PREDICTED: aldehyde dehydrogenase family 3 member H1-like [Populus euphratica]
15 Hb_003915_020 0.1204604438 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
16 Hb_001227_140 0.1226119994 - - PREDICTED: protein ROS1 [Jatropha curcas]
17 Hb_000948_120 0.1257452571 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
18 Hb_000042_090 0.1285715131 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
19 Hb_000968_010 0.1289030906 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
20 Hb_000345_400 0.1296659509 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003119_130 Hb_003119_130 Hb_078582_010 Hb_078582_010 Hb_003119_130--Hb_078582_010 Hb_016687_010 Hb_016687_010 Hb_003119_130--Hb_016687_010 Hb_003453_060 Hb_003453_060 Hb_003119_130--Hb_003453_060 Hb_000175_200 Hb_000175_200 Hb_003119_130--Hb_000175_200 Hb_001172_150 Hb_001172_150 Hb_003119_130--Hb_001172_150 Hb_005575_010 Hb_005575_010 Hb_003119_130--Hb_005575_010 Hb_078582_010--Hb_003453_060 Hb_000037_200 Hb_000037_200 Hb_078582_010--Hb_000037_200 Hb_000260_750 Hb_000260_750 Hb_078582_010--Hb_000260_750 Hb_000759_040 Hb_000759_040 Hb_078582_010--Hb_000759_040 Hb_078582_010--Hb_005575_010 Hb_000987_020 Hb_000987_020 Hb_078582_010--Hb_000987_020 Hb_000697_020 Hb_000697_020 Hb_016687_010--Hb_000697_020 Hb_003141_060 Hb_003141_060 Hb_016687_010--Hb_003141_060 Hb_008878_020 Hb_008878_020 Hb_016687_010--Hb_008878_020 Hb_016687_010--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_016687_010--Hb_061126_010 Hb_003453_060--Hb_005575_010 Hb_002025_290 Hb_002025_290 Hb_003453_060--Hb_002025_290 Hb_003043_130 Hb_003043_130 Hb_003453_060--Hb_003043_130 Hb_001544_060 Hb_001544_060 Hb_003453_060--Hb_001544_060 Hb_000212_270 Hb_000212_270 Hb_000175_200--Hb_000212_270 Hb_000345_400 Hb_000345_400 Hb_000175_200--Hb_000345_400 Hb_001898_100 Hb_001898_100 Hb_000175_200--Hb_001898_100 Hb_001638_190 Hb_001638_190 Hb_000175_200--Hb_001638_190 Hb_004102_080 Hb_004102_080 Hb_000175_200--Hb_004102_080 Hb_001172_150--Hb_000697_020 Hb_001172_150--Hb_008878_020 Hb_001172_150--Hb_000212_270 Hb_001172_150--Hb_061126_010 Hb_000705_010 Hb_000705_010 Hb_001172_150--Hb_000705_010 Hb_000947_010 Hb_000947_010 Hb_005575_010--Hb_000947_010 Hb_005575_010--Hb_003043_130 Hb_005575_010--Hb_002025_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.182512 4.82546 27.9032 8.27534 0.0633692 0.240658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.431575 0.0970097 0.136755 6.82377 26.345

CAGE analysis