Hb_003141_060

Information

Type transcription factor
Description TF Family: TRAF
Location Contig3141: 62409-67616
Sequence    

Annotation

kegg
ID vvi:100266551
description ETO1-like protein 1
nr
ID XP_012092165.1
description PREDICTED: ETO1-like protein 1 [Jatropha curcas]
swissprot
ID Q9ZQX6
description ETO1-like protein 1 OS=Arabidopsis thaliana GN=EOL1 PE=1 SV=1
trembl
ID A0A067JC65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21873 PE=4 SV=1
Gene Ontology
ID GO:0000394
description eto1-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33193: 62192-67679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003141_060 0.0 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
2 Hb_000968_010 0.0853533283 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
3 Hb_001227_140 0.096404927 - - PREDICTED: protein ROS1 [Jatropha curcas]
4 Hb_003915_020 0.0979665982 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
5 Hb_000002_300 0.0987981612 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
6 Hb_016687_010 0.1051005899 - - PREDICTED: uncharacterized protein LOC105637401 [Jatropha curcas]
7 Hb_000948_120 0.1060071889 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
8 Hb_003119_130 0.106288939 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
9 Hb_000608_360 0.1109557749 - - calreticulin, putative [Ricinus communis]
10 Hb_030827_010 0.1117951655 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
11 Hb_000922_160 0.1188492917 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
12 Hb_069696_020 0.1250544471 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
13 Hb_001579_060 0.1257347877 - - carbonic anhydrase, putative [Ricinus communis]
14 Hb_006478_050 0.1265551957 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
15 Hb_003416_020 0.1274709673 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
16 Hb_006277_080 0.1276765426 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
17 Hb_000164_110 0.1281558958 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
18 Hb_003145_010 0.1293440059 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
19 Hb_000853_050 0.1293991129 - - PREDICTED: putative GTP diphosphokinase RSH1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000694_050 0.1301138441 - - Nuclease PA3, putative [Ricinus communis]

Gene co-expression network

sample Hb_003141_060 Hb_003141_060 Hb_000968_010 Hb_000968_010 Hb_003141_060--Hb_000968_010 Hb_001227_140 Hb_001227_140 Hb_003141_060--Hb_001227_140 Hb_003915_020 Hb_003915_020 Hb_003141_060--Hb_003915_020 Hb_000002_300 Hb_000002_300 Hb_003141_060--Hb_000002_300 Hb_016687_010 Hb_016687_010 Hb_003141_060--Hb_016687_010 Hb_000948_120 Hb_000948_120 Hb_003141_060--Hb_000948_120 Hb_000270_640 Hb_000270_640 Hb_000968_010--Hb_000270_640 Hb_011104_020 Hb_011104_020 Hb_000968_010--Hb_011104_020 Hb_000680_130 Hb_000680_130 Hb_000968_010--Hb_000680_130 Hb_001579_060 Hb_001579_060 Hb_000968_010--Hb_001579_060 Hb_000373_010 Hb_000373_010 Hb_000968_010--Hb_000373_010 Hb_001227_140--Hb_003915_020 Hb_001227_140--Hb_000948_120 Hb_000940_030 Hb_000940_030 Hb_001227_140--Hb_000940_030 Hb_001365_030 Hb_001365_030 Hb_001227_140--Hb_001365_030 Hb_003055_070 Hb_003055_070 Hb_001227_140--Hb_003055_070 Hb_004102_080 Hb_004102_080 Hb_003915_020--Hb_004102_080 Hb_121089_010 Hb_121089_010 Hb_003915_020--Hb_121089_010 Hb_003915_020--Hb_000940_030 Hb_003915_020--Hb_000948_120 Hb_001541_280 Hb_001541_280 Hb_000002_300--Hb_001541_280 Hb_074548_010 Hb_074548_010 Hb_000002_300--Hb_074548_010 Hb_003605_060 Hb_003605_060 Hb_000002_300--Hb_003605_060 Hb_000002_300--Hb_000948_120 Hb_002636_030 Hb_002636_030 Hb_000002_300--Hb_002636_030 Hb_000697_020 Hb_000697_020 Hb_016687_010--Hb_000697_020 Hb_003119_130 Hb_003119_130 Hb_016687_010--Hb_003119_130 Hb_008878_020 Hb_008878_020 Hb_016687_010--Hb_008878_020 Hb_001172_150 Hb_001172_150 Hb_016687_010--Hb_001172_150 Hb_061126_010 Hb_061126_010 Hb_016687_010--Hb_061126_010 Hb_000948_120--Hb_002636_030 Hb_000948_120--Hb_121089_010 Hb_001159_070 Hb_001159_070 Hb_000948_120--Hb_001159_070 Hb_003680_060 Hb_003680_060 Hb_000948_120--Hb_003680_060 Hb_000140_460 Hb_000140_460 Hb_000948_120--Hb_000140_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.334304 6.35997 21.3153 9.97727 0.517984 0.435798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.55651 0.529604 0.175641 6.85908 30.5876

CAGE analysis