Hb_003915_020

Information

Type -
Description -
Location Contig3915: 24018-29416
Sequence    

Annotation

kegg
ID pop:POPTR_0007s00440g
description POPTRDRAFT_718123; hypothetical protein
nr
ID XP_012081923.1
description PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
swissprot
ID Q4LDF9
description Outer envelope pore protein 37, chloroplastic OS=Pisum sativum GN=OEP37 PE=1 SV=1
trembl
ID A0A067KBA7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19268 PE=4 SV=1
Gene Ontology
ID GO:0031359
description outer envelope pore protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39216: 24335-29180
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003915_020 0.0 - - PREDICTED: outer envelope pore protein 37, chloroplastic [Jatropha curcas]
2 Hb_001227_140 0.0708288209 - - PREDICTED: protein ROS1 [Jatropha curcas]
3 Hb_004102_080 0.0962988121 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
4 Hb_003141_060 0.0979665982 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
5 Hb_121089_010 0.1057494309 - - PREDICTED: uncharacterized protein LOC105645663 [Jatropha curcas]
6 Hb_000940_030 0.1059400735 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
7 Hb_000948_120 0.1158636591 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
8 Hb_000042_090 0.1196850788 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
9 Hb_003119_130 0.1204604438 - - hypothetical protein POPTR_0017s07770g [Populus trichocarpa]
10 Hb_004162_270 0.1234763981 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001365_030 0.1253886834 - - PREDICTED: uncharacterized protein LOC102609547 [Citrus sinensis]
12 Hb_000922_160 0.126127986 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose 5-phosphate reductoisomerase putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis]
13 Hb_000270_280 0.1295228783 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_003416_020 0.1299036642 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
15 Hb_000684_200 0.1303001633 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_003055_070 0.1306480701 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
17 Hb_000175_200 0.1308271943 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003053_070 0.1346211236 - - PREDICTED: phosphoglucan phosphatase LSF1, chloroplastic [Jatropha curcas]
19 Hb_003177_050 0.1348195602 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
20 Hb_010868_040 0.1349876242 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_003915_020 Hb_003915_020 Hb_001227_140 Hb_001227_140 Hb_003915_020--Hb_001227_140 Hb_004102_080 Hb_004102_080 Hb_003915_020--Hb_004102_080 Hb_003141_060 Hb_003141_060 Hb_003915_020--Hb_003141_060 Hb_121089_010 Hb_121089_010 Hb_003915_020--Hb_121089_010 Hb_000940_030 Hb_000940_030 Hb_003915_020--Hb_000940_030 Hb_000948_120 Hb_000948_120 Hb_003915_020--Hb_000948_120 Hb_001227_140--Hb_003141_060 Hb_001227_140--Hb_000948_120 Hb_001227_140--Hb_000940_030 Hb_001365_030 Hb_001365_030 Hb_001227_140--Hb_001365_030 Hb_003055_070 Hb_003055_070 Hb_001227_140--Hb_003055_070 Hb_000175_200 Hb_000175_200 Hb_004102_080--Hb_000175_200 Hb_004102_080--Hb_121089_010 Hb_000926_040 Hb_000926_040 Hb_004102_080--Hb_000926_040 Hb_021346_050 Hb_021346_050 Hb_004102_080--Hb_021346_050 Hb_010868_040 Hb_010868_040 Hb_004102_080--Hb_010868_040 Hb_000968_010 Hb_000968_010 Hb_003141_060--Hb_000968_010 Hb_000002_300 Hb_000002_300 Hb_003141_060--Hb_000002_300 Hb_016687_010 Hb_016687_010 Hb_003141_060--Hb_016687_010 Hb_003141_060--Hb_000948_120 Hb_121089_010--Hb_000948_120 Hb_000120_490 Hb_000120_490 Hb_121089_010--Hb_000120_490 Hb_003680_060 Hb_003680_060 Hb_121089_010--Hb_003680_060 Hb_121089_010--Hb_001227_140 Hb_000940_030--Hb_010868_040 Hb_000310_060 Hb_000310_060 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_000940_030--Hb_003055_070 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_000940_030--Hb_001365_030 Hb_002636_030 Hb_002636_030 Hb_000948_120--Hb_002636_030 Hb_001159_070 Hb_001159_070 Hb_000948_120--Hb_001159_070 Hb_000948_120--Hb_003680_060 Hb_000140_460 Hb_000140_460 Hb_000948_120--Hb_000140_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.638189 7.94669 36.5548 14.4597 0.650238 0.640003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34063 2.35729 0.866544 10.6312 35.2874

CAGE analysis