Hb_010868_040

Information

Type -
Description -
Location Contig10868: 56145-66138
Sequence    

Annotation

kegg
ID pop:POPTR_0018s11750g
description POPTRDRAFT_835954; hypothetical protein
nr
ID XP_011018019.1
description PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
swissprot
ID Q56X72
description Reticulon-like protein B21 OS=Arabidopsis thaliana GN=RTNLB21 PE=2 SV=2
trembl
ID B9IME9
description Reticulon-like protein OS=Populus trichocarpa GN=POPTR_0018s11750g PE=4 SV=2
Gene Ontology
ID GO:0016020
description reticulon-like protein b21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02627: 56059-66151 , PASA_asmbl_02630: 63262-64079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010868_040 0.0 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
2 Hb_004855_020 0.0697773983 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
3 Hb_000227_400 0.0795070941 - - lipoxygenase, putative [Ricinus communis]
4 Hb_000940_030 0.0883914601 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
5 Hb_000207_350 0.0894804228 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
6 Hb_000243_060 0.0981956107 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
7 Hb_010381_040 0.098199687 - - beta-galactosidase, putative [Ricinus communis]
8 Hb_000926_040 0.1012603177 - - PREDICTED: DNA mismatch repair protein MSH5 [Jatropha curcas]
9 Hb_002701_070 0.1043918826 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
10 Hb_003398_040 0.1068348303 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
11 Hb_001922_110 0.1077444947 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000310_060 0.1133873064 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
13 Hb_001123_310 0.1178305348 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
14 Hb_000996_080 0.1180077635 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
15 Hb_001775_120 0.1191347579 - - PREDICTED: nucleobase-ascorbate transporter 12 [Jatropha curcas]
16 Hb_000120_300 0.1202898967 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
17 Hb_001104_150 0.1239782084 - - PREDICTED: protein ROS1 [Jatropha curcas]
18 Hb_000009_420 0.124649945 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
19 Hb_002641_120 0.1266797799 - - PREDICTED: calmodulin [Jatropha curcas]
20 Hb_000416_190 0.1277430893 - - -

Gene co-expression network

sample Hb_010868_040 Hb_010868_040 Hb_004855_020 Hb_004855_020 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_000207_350 Hb_000207_350 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040 Hb_004855_020--Hb_000207_350 Hb_004855_020--Hb_000227_400 Hb_004855_020--Hb_010381_040 Hb_001104_150 Hb_001104_150 Hb_004855_020--Hb_001104_150 Hb_001123_310 Hb_001123_310 Hb_004855_020--Hb_001123_310 Hb_001922_110 Hb_001922_110 Hb_000227_400--Hb_001922_110 Hb_000227_400--Hb_000207_350 Hb_000958_120 Hb_000958_120 Hb_000227_400--Hb_000958_120 Hb_000227_400--Hb_000243_060 Hb_000310_060 Hb_000310_060 Hb_000940_030--Hb_000310_060 Hb_000270_280 Hb_000270_280 Hb_000940_030--Hb_000270_280 Hb_003055_070 Hb_003055_070 Hb_000940_030--Hb_003055_070 Hb_000996_080 Hb_000996_080 Hb_000940_030--Hb_000996_080 Hb_001365_030 Hb_001365_030 Hb_000940_030--Hb_001365_030 Hb_000207_350--Hb_001104_150 Hb_000207_350--Hb_001123_310 Hb_000207_350--Hb_010381_040 Hb_005568_020 Hb_005568_020 Hb_000207_350--Hb_005568_020 Hb_000181_330 Hb_000181_330 Hb_000243_060--Hb_000181_330 Hb_002078_390 Hb_002078_390 Hb_000243_060--Hb_002078_390 Hb_000243_060--Hb_010381_040 Hb_000926_040 Hb_000926_040 Hb_000243_060--Hb_000926_040 Hb_010381_040--Hb_001123_310 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.56219 11.0338 53.9256 29.3485 1.52569 1.31331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.31887 3.56956 0.852479 11.7782 31.1643

CAGE analysis