Hb_001922_110

Information

Type -
Description -
Location Contig1922: 109244-109906
Sequence    

Annotation

kegg
ID rcu:RCOM_1581500
description hypothetical protein
nr
ID XP_002513621.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84JK8
description Probable membrane-associated kinase regulator 6 OS=Arabidopsis thaliana GN=MAKR6 PE=2 SV=1
trembl
ID B9RIQ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581500 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable membrane-associated kinase regulator 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19162: 108734-110025 , PASA_asmbl_19163: 108987-109992
cDNA
(Sanger)
(ID:Location)		 007_B18.ab1: 109272-110023 , 018_G05.ab1: 109886-110010

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000227_400 0.0660183394 - - lipoxygenase, putative [Ricinus communis]
3 Hb_001141_050 0.0823777101 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
4 Hb_000958_120 0.0959895475 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
5 Hb_000792_050 0.107712771 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_010868_040 0.1077444947 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
7 Hb_008511_040 0.1128039951 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_004855_020 0.117060978 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
9 Hb_006133_020 0.1171205353 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
10 Hb_000069_300 0.12209586 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_000032_410 0.1233231814 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
12 Hb_000076_250 0.124339266 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000207_350 0.1266186367 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
14 Hb_002701_070 0.1277267207 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
15 Hb_000940_030 0.1305599197 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
16 Hb_005527_060 0.1316467977 - - malic enzyme, putative [Ricinus communis]
17 Hb_034579_020 0.1320629093 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000996_080 0.1326342978 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
19 Hb_000230_190 0.132728966 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 isoform X1 [Jatropha curcas]
20 Hb_001123_310 0.1329028421 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]

Gene co-expression network

sample Hb_001922_110 Hb_001922_110 Hb_000227_400 Hb_000227_400 Hb_001922_110--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_001922_110--Hb_001141_050 Hb_000958_120 Hb_000958_120 Hb_001922_110--Hb_000958_120 Hb_000792_050 Hb_000792_050 Hb_001922_110--Hb_000792_050 Hb_010868_040 Hb_010868_040 Hb_001922_110--Hb_010868_040 Hb_008511_040 Hb_008511_040 Hb_001922_110--Hb_008511_040 Hb_000227_400--Hb_010868_040 Hb_004855_020 Hb_004855_020 Hb_000227_400--Hb_004855_020 Hb_000207_350 Hb_000207_350 Hb_000227_400--Hb_000207_350 Hb_000227_400--Hb_000958_120 Hb_000243_060 Hb_000243_060 Hb_000227_400--Hb_000243_060 Hb_000032_410 Hb_000032_410 Hb_001141_050--Hb_000032_410 Hb_000032_200 Hb_000032_200 Hb_001141_050--Hb_000032_200 Hb_006133_020 Hb_006133_020 Hb_001141_050--Hb_006133_020 Hb_000076_250 Hb_000076_250 Hb_001141_050--Hb_000076_250 Hb_003640_050 Hb_003640_050 Hb_001141_050--Hb_003640_050 Hb_002701_070 Hb_002701_070 Hb_000958_120--Hb_002701_070 Hb_000322_030 Hb_000322_030 Hb_000958_120--Hb_000322_030 Hb_000390_210 Hb_000390_210 Hb_000958_120--Hb_000390_210 Hb_001544_050 Hb_001544_050 Hb_000958_120--Hb_001544_050 Hb_000792_050--Hb_000227_400 Hb_000792_050--Hb_001141_050 Hb_003160_070 Hb_003160_070 Hb_000792_050--Hb_003160_070 Hb_003397_030 Hb_003397_030 Hb_000792_050--Hb_003397_030 Hb_000996_080 Hb_000996_080 Hb_000792_050--Hb_000996_080 Hb_010868_040--Hb_004855_020 Hb_000940_030 Hb_000940_030 Hb_010868_040--Hb_000940_030 Hb_010868_040--Hb_000207_350 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040 Hb_008511_040--Hb_006133_020 Hb_000008_200 Hb_000008_200 Hb_008511_040--Hb_000008_200 Hb_000069_300 Hb_000069_300 Hb_008511_040--Hb_000069_300 Hb_008511_040--Hb_000227_400 Hb_001123_310 Hb_001123_310 Hb_008511_040--Hb_001123_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95556 6.43559 24.0499 11.7309 0.73398 1.10267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30993 0.755107 1.21699 3.22005 11.3246

CAGE analysis