Hb_001544_050

Information

Type -
Description -
Location Contig1544: 64977-68171
Sequence    

Annotation

kegg
ID rcu:RCOM_0842310
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012072200.1
description PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
swissprot
ID Q8GUG9
description U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2
trembl
ID A0A067L0L5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04683 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13341: 64998-68093
cDNA
(Sanger)
(ID:Location)		 001_G10.ab1: 66152-67816 , 043_B13.ab1: 66177-67816

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001544_050 0.0 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
2 Hb_001180_010 0.0675506102 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
3 Hb_000390_210 0.0747190288 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_000465_410 0.0747582422 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002701_070 0.0786679869 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
6 Hb_000749_260 0.0900679743 - - PREDICTED: protochlorophyllide reductase, chloroplastic [Jatropha curcas]
7 Hb_004994_330 0.0981885478 - - DNA binding protein, putative [Ricinus communis]
8 Hb_147378_010 0.1010173149 - - -
9 Hb_143004_020 0.1034590996 - - PREDICTED: phosphopantothenate--cysteine ligase 2-like [Jatropha curcas]
10 Hb_008053_030 0.1118213882 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
11 Hb_000958_120 0.114392763 - - PREDICTED: uncharacterized protein LOC105646385 [Jatropha curcas]
12 Hb_000322_030 0.1168721104 - - PREDICTED: uncharacterized protein LOC105637911 [Jatropha curcas]
13 Hb_001433_150 0.1193856638 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001017_130 0.1211915238 - - hypothetical protein POPTR_0010s06070g [Populus trichocarpa]
15 Hb_002662_110 0.1269767937 - - Kinesin heavy chain, putative [Ricinus communis]
16 Hb_000076_030 0.1275760995 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
17 Hb_006153_150 0.1300295379 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
18 Hb_010381_040 0.1319718488 - - beta-galactosidase, putative [Ricinus communis]
19 Hb_089966_010 0.1320989426 - - -
20 Hb_000207_350 0.1324121287 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]

Gene co-expression network

sample Hb_001544_050 Hb_001544_050 Hb_001180_010 Hb_001180_010 Hb_001544_050--Hb_001180_010 Hb_000390_210 Hb_000390_210 Hb_001544_050--Hb_000390_210 Hb_000465_410 Hb_000465_410 Hb_001544_050--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001544_050--Hb_002701_070 Hb_000749_260 Hb_000749_260 Hb_001544_050--Hb_000749_260 Hb_004994_330 Hb_004994_330 Hb_001544_050--Hb_004994_330 Hb_000076_030 Hb_000076_030 Hb_001180_010--Hb_000076_030 Hb_001180_010--Hb_004994_330 Hb_048476_140 Hb_048476_140 Hb_001180_010--Hb_048476_140 Hb_001180_010--Hb_000465_410 Hb_001180_010--Hb_002701_070 Hb_000390_210--Hb_000749_260 Hb_147378_010 Hb_147378_010 Hb_000390_210--Hb_147378_010 Hb_143004_020 Hb_143004_020 Hb_000390_210--Hb_143004_020 Hb_000061_250 Hb_000061_250 Hb_000390_210--Hb_000061_250 Hb_000322_030 Hb_000322_030 Hb_000390_210--Hb_000322_030 Hb_000465_410--Hb_002701_070 Hb_000032_610 Hb_000032_610 Hb_000465_410--Hb_000032_610 Hb_000465_410--Hb_004994_330 Hb_000465_410--Hb_000749_260 Hb_000958_120 Hb_000958_120 Hb_002701_070--Hb_000958_120 Hb_000996_080 Hb_000996_080 Hb_002701_070--Hb_000996_080 Hb_010868_040 Hb_010868_040 Hb_002701_070--Hb_010868_040 Hb_000749_260--Hb_147378_010 Hb_000749_260--Hb_002701_070 Hb_000352_280 Hb_000352_280 Hb_000749_260--Hb_000352_280 Hb_002662_110 Hb_002662_110 Hb_004994_330--Hb_002662_110 Hb_000417_050 Hb_000417_050 Hb_004994_330--Hb_000417_050 Hb_000207_350 Hb_000207_350 Hb_004994_330--Hb_000207_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.805092 1.80832 15.5146 11.9816 0.603194 0.264365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.885412 1.01476 1.32591 1.52858 11.6646

CAGE analysis