Hb_000076_030

Information

Type -
Description -
Location Contig76: 30506-44429
Sequence    

Annotation

kegg
ID rcu:RCOM_0586590
description hypothetical protein
nr
ID XP_012070779.1
description PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
swissprot
ID Q9T041
description Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana GN=TOR1 PE=1 SV=2
trembl
ID A0A067KSG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00849 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57227: 30512-33083 , PASA_asmbl_57228: 32324-33083 , PASA_asmbl_57229: 33325-44267 , PASA_asmbl_57230: 33089-34111 , PASA_asmbl_57231: 38927-39184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_030 0.0 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
2 Hb_048476_140 0.0670048352 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
3 Hb_001180_010 0.07937857 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
4 Hb_161396_010 0.085687369 - - hypothetical protein F383_26394 [Gossypium arboreum]
5 Hb_022693_110 0.1033099614 - - phosphate transporter [Manihot esculenta]
6 Hb_011174_040 0.1064407575 - - conserved hypothetical protein [Ricinus communis]
7 Hb_042083_030 0.108370876 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_007101_260 0.1121607603 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
9 Hb_004994_330 0.1123752202 - - DNA binding protein, putative [Ricinus communis]
10 Hb_004041_050 0.1162438537 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
11 Hb_000327_360 0.1195149334 - - unnamed protein product [Coffea canephora]
12 Hb_002662_110 0.1207657738 - - Kinesin heavy chain, putative [Ricinus communis]
13 Hb_000417_050 0.1241775581 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
14 Hb_001544_050 0.1275760995 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
15 Hb_000207_350 0.1299352844 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
16 Hb_000749_020 0.1300231121 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
17 Hb_001104_150 0.1315616228 - - PREDICTED: protein ROS1 [Jatropha curcas]
18 Hb_000193_340 0.132270849 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
19 Hb_000465_410 0.1323027884 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001433_150 0.1330524486 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000076_030 Hb_000076_030 Hb_048476_140 Hb_048476_140 Hb_000076_030--Hb_048476_140 Hb_001180_010 Hb_001180_010 Hb_000076_030--Hb_001180_010 Hb_161396_010 Hb_161396_010 Hb_000076_030--Hb_161396_010 Hb_022693_110 Hb_022693_110 Hb_000076_030--Hb_022693_110 Hb_011174_040 Hb_011174_040 Hb_000076_030--Hb_011174_040 Hb_042083_030 Hb_042083_030 Hb_000076_030--Hb_042083_030 Hb_048476_140--Hb_001180_010 Hb_004041_050 Hb_004041_050 Hb_048476_140--Hb_004041_050 Hb_048476_140--Hb_022693_110 Hb_048476_140--Hb_042083_030 Hb_048476_140--Hb_161396_010 Hb_001544_050 Hb_001544_050 Hb_001180_010--Hb_001544_050 Hb_004994_330 Hb_004994_330 Hb_001180_010--Hb_004994_330 Hb_000465_410 Hb_000465_410 Hb_001180_010--Hb_000465_410 Hb_002701_070 Hb_002701_070 Hb_001180_010--Hb_002701_070 Hb_007101_260 Hb_007101_260 Hb_161396_010--Hb_007101_260 Hb_000193_340 Hb_000193_340 Hb_161396_010--Hb_000193_340 Hb_000808_150 Hb_000808_150 Hb_161396_010--Hb_000808_150 Hb_002759_220 Hb_002759_220 Hb_161396_010--Hb_002759_220 Hb_000200_330 Hb_000200_330 Hb_022693_110--Hb_000200_330 Hb_022693_110--Hb_011174_040 Hb_000689_050 Hb_000689_050 Hb_022693_110--Hb_000689_050 Hb_022693_110--Hb_004994_330 Hb_003050_360 Hb_003050_360 Hb_011174_040--Hb_003050_360 Hb_011174_040--Hb_007101_260 Hb_011174_040--Hb_048476_140 Hb_010672_050 Hb_010672_050 Hb_011174_040--Hb_010672_050 Hb_010381_040 Hb_010381_040 Hb_011174_040--Hb_010381_040 Hb_042083_030--Hb_004041_050 Hb_042083_030--Hb_000193_340 Hb_000417_380 Hb_000417_380 Hb_042083_030--Hb_000417_380 Hb_042083_030--Hb_161396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.220319 1.10537 6.40298 7.73946 0.144851 0.220234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.243017 0.621511 0.708243 2.03896 6.31914

CAGE analysis