Hb_161396_010

Information

Type -
Description -
Location Contig161396: 865-2679
Sequence    

Annotation

kegg
ID tcc:TCM_011080
description Uncharacterized protein isoform 1
nr
ID KHG02358.1
description hypothetical protein F383_26394 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0MJR4
description Uncharacterized protein OS=Gossypium arboreum GN=F383_26394 PE=4 SV=1
Gene Ontology
ID GO:0009507
description hypothetical protein F383_26394

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14461: 888-2899 , PASA_asmbl_14462: 1390-1950
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161396_010 0.0 - - hypothetical protein F383_26394 [Gossypium arboreum]
2 Hb_000076_030 0.085687369 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
3 Hb_007101_260 0.0994640886 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
4 Hb_000193_340 0.1031507079 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
5 Hb_000808_150 0.1110409578 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
6 Hb_048476_140 0.1124876548 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
7 Hb_002759_220 0.1154383067 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
8 Hb_000749_020 0.1159220095 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
9 Hb_003226_200 0.1167565793 - - magnesium/proton exchanger, putative [Ricinus communis]
10 Hb_000327_360 0.1240453285 - - unnamed protein product [Coffea canephora]
11 Hb_000077_310 0.1284078755 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
12 Hb_042083_030 0.1301004222 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001180_010 0.1309859681 - - PREDICTED: glucan endo-1,3-beta-glucosidase 9 [Jatropha curcas]
14 Hb_004041_050 0.1314458705 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
15 Hb_002397_050 0.1315827537 - - PREDICTED: ACT domain-containing protein ACR4 isoform X2 [Jatropha curcas]
16 Hb_000054_030 0.1331368374 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
17 Hb_011174_040 0.1378611857 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006736_050 0.138918808 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
19 Hb_004032_110 0.1393514791 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
20 Hb_000115_360 0.1393947086 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_161396_010 Hb_161396_010 Hb_000076_030 Hb_000076_030 Hb_161396_010--Hb_000076_030 Hb_007101_260 Hb_007101_260 Hb_161396_010--Hb_007101_260 Hb_000193_340 Hb_000193_340 Hb_161396_010--Hb_000193_340 Hb_000808_150 Hb_000808_150 Hb_161396_010--Hb_000808_150 Hb_048476_140 Hb_048476_140 Hb_161396_010--Hb_048476_140 Hb_002759_220 Hb_002759_220 Hb_161396_010--Hb_002759_220 Hb_000076_030--Hb_048476_140 Hb_001180_010 Hb_001180_010 Hb_000076_030--Hb_001180_010 Hb_022693_110 Hb_022693_110 Hb_000076_030--Hb_022693_110 Hb_011174_040 Hb_011174_040 Hb_000076_030--Hb_011174_040 Hb_042083_030 Hb_042083_030 Hb_000076_030--Hb_042083_030 Hb_003050_360 Hb_003050_360 Hb_007101_260--Hb_003050_360 Hb_000327_360 Hb_000327_360 Hb_007101_260--Hb_000327_360 Hb_007101_260--Hb_000193_340 Hb_000283_140 Hb_000283_140 Hb_007101_260--Hb_000283_140 Hb_006120_060 Hb_006120_060 Hb_007101_260--Hb_006120_060 Hb_006153_160 Hb_006153_160 Hb_000193_340--Hb_006153_160 Hb_000193_340--Hb_002759_220 Hb_000193_340--Hb_000808_150 Hb_000328_010 Hb_000328_010 Hb_000193_340--Hb_000328_010 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000139_300 Hb_000139_300 Hb_000808_150--Hb_000139_300 Hb_000749_020 Hb_000749_020 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000808_150--Hb_000327_360 Hb_048476_140--Hb_001180_010 Hb_004041_050 Hb_004041_050 Hb_048476_140--Hb_004041_050 Hb_048476_140--Hb_022693_110 Hb_048476_140--Hb_042083_030 Hb_003226_200 Hb_003226_200 Hb_002759_220--Hb_003226_200 Hb_003226_250 Hb_003226_250 Hb_002759_220--Hb_003226_250 Hb_002759_220--Hb_006153_160 Hb_000805_010 Hb_000805_010 Hb_002759_220--Hb_000805_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10249 13.6314 52.9795 82.9892 0.54513 2.39365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13181 12.8187 8.86109 22.9488 66.6349

CAGE analysis