Hb_000193_340

Information

Type -
Description -
Location Contig193: 283295-290939
Sequence    

Annotation

kegg
ID rcu:RCOM_1471020
description ATP binding protein, putative (EC:2.7.11.23)
nr
ID XP_012080316.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
swissprot
ID F4I114
description Probable serine/threonine-protein kinase At1g09600 OS=Arabidopsis thaliana GN=At1g09600 PE=3 SV=1
trembl
ID A0A067K8H0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11669 PE=4 SV=1
Gene Ontology
ID GO:0005524
description probable serine threonine-protein kinase at1g54610 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19272: 283489-289377 , PASA_asmbl_19273: 286833-290646 , PASA_asmbl_19274: 286833-290608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_340 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
2 Hb_006153_160 0.0741704618 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X4 [Jatropha curcas]
3 Hb_007101_260 0.1000573413 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
4 Hb_161396_010 0.1031507079 - - hypothetical protein F383_26394 [Gossypium arboreum]
5 Hb_002759_220 0.1148552932 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
6 Hb_000808_150 0.1165128742 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
7 Hb_000328_010 0.1219769265 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
8 Hb_042083_030 0.1250410284 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001433_150 0.1297714317 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000076_030 0.132270849 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 isoform X1 [Jatropha curcas]
11 Hb_003226_200 0.1331801607 - - magnesium/proton exchanger, putative [Ricinus communis]
12 Hb_001369_630 0.1350581411 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
13 Hb_000025_160 0.1360809491 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
14 Hb_000086_210 0.1388684316 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_000023_110 0.1417514863 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
16 Hb_004041_050 0.1419382535 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
17 Hb_000935_040 0.1419727557 - - Uncharacterized protein isoform 2 [Theobroma cacao]
18 Hb_003371_070 0.1438390774 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
19 Hb_001369_010 0.145159441 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
20 Hb_002028_110 0.1457129597 - - PREDICTED: F-box only protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000193_340 Hb_000193_340 Hb_006153_160 Hb_006153_160 Hb_000193_340--Hb_006153_160 Hb_007101_260 Hb_007101_260 Hb_000193_340--Hb_007101_260 Hb_161396_010 Hb_161396_010 Hb_000193_340--Hb_161396_010 Hb_002759_220 Hb_002759_220 Hb_000193_340--Hb_002759_220 Hb_000808_150 Hb_000808_150 Hb_000193_340--Hb_000808_150 Hb_000328_010 Hb_000328_010 Hb_000193_340--Hb_000328_010 Hb_006153_160--Hb_002759_220 Hb_006153_160--Hb_000328_010 Hb_012395_110 Hb_012395_110 Hb_006153_160--Hb_012395_110 Hb_001433_150 Hb_001433_150 Hb_006153_160--Hb_001433_150 Hb_006153_160--Hb_007101_260 Hb_003050_360 Hb_003050_360 Hb_007101_260--Hb_003050_360 Hb_000327_360 Hb_000327_360 Hb_007101_260--Hb_000327_360 Hb_007101_260--Hb_161396_010 Hb_000283_140 Hb_000283_140 Hb_007101_260--Hb_000283_140 Hb_006120_060 Hb_006120_060 Hb_007101_260--Hb_006120_060 Hb_000076_030 Hb_000076_030 Hb_161396_010--Hb_000076_030 Hb_161396_010--Hb_000808_150 Hb_048476_140 Hb_048476_140 Hb_161396_010--Hb_048476_140 Hb_161396_010--Hb_002759_220 Hb_003226_200 Hb_003226_200 Hb_002759_220--Hb_003226_200 Hb_003226_250 Hb_003226_250 Hb_002759_220--Hb_003226_250 Hb_000805_010 Hb_000805_010 Hb_002759_220--Hb_000805_010 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000139_300 Hb_000139_300 Hb_000808_150--Hb_000139_300 Hb_000749_020 Hb_000749_020 Hb_000808_150--Hb_000749_020 Hb_001369_010 Hb_001369_010 Hb_000808_150--Hb_001369_010 Hb_000808_150--Hb_000327_360 Hb_002498_030 Hb_002498_030 Hb_000328_010--Hb_002498_030 Hb_000086_210 Hb_000086_210 Hb_000328_010--Hb_000086_210 Hb_017439_010 Hb_017439_010 Hb_000328_010--Hb_017439_010 Hb_005144_120 Hb_005144_120 Hb_000328_010--Hb_005144_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.168281 1.61004 5.44997 8.50416 0.119785 0.175494
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.939409 0.903481 1.69678 1.59802 5.2975

CAGE analysis