Hb_017439_010

Information

Type -
Description -
Location Contig17439: 2764-5121
Sequence    

Annotation

kegg
ID mdm:103418811
description actin
nr
ID AFN53639.1
description putative actin-97 protein [Linum usitatissimum]
swissprot
ID O81221
description Actin OS=Gossypium hirsutum PE=3 SV=1
trembl
ID I6YM48
description Putative actin-97 protein OS=Linum usitatissimum PE=3 SV=1
Gene Ontology
ID GO:0005737
description actin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16619: 2620-5831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017439_010 0.0 - - putative actin-97 protein [Linum usitatissimum]
2 Hb_002498_030 0.1140425531 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001401_040 0.1201445156 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
4 Hb_003055_090 0.1267925729 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
5 Hb_001268_160 0.134969826 - - Glycerophosphodiester phosphodiesterase [Medicago truncatula]
6 Hb_010889_010 0.1354060137 - - PREDICTED: myosin-12 [Jatropha curcas]
7 Hb_000328_010 0.1404407259 - - PREDICTED: QWRF motif-containing protein 8-like [Jatropha curcas]
8 Hb_012286_060 0.1453163298 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
9 Hb_003408_010 0.1460344493 - - fructokinase [Manihot esculenta]
10 Hb_000740_150 0.1488474917 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
11 Hb_000023_110 0.1507347495 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
12 Hb_118939_010 0.1513521084 - - protein binding protein, putative [Ricinus communis]
13 Hb_001408_170 0.1528599039 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
14 Hb_000008_200 0.1583004425 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 11 [Jatropha curcas]
15 Hb_001250_130 0.1613043993 - - hypothetical protein POPTR_0008s19280g [Populus trichocarpa]
16 Hb_001366_170 0.1630458393 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
17 Hb_000932_050 0.1638761173 - - annexin [Manihot esculenta]
18 Hb_034726_010 0.1650314226 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_006925_050 0.1661379526 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
20 Hb_003728_110 0.1691950788 - - PREDICTED: calmodulin-like protein 3 [Populus euphratica]

Gene co-expression network

sample Hb_017439_010 Hb_017439_010 Hb_002498_030 Hb_002498_030 Hb_017439_010--Hb_002498_030 Hb_001401_040 Hb_001401_040 Hb_017439_010--Hb_001401_040 Hb_003055_090 Hb_003055_090 Hb_017439_010--Hb_003055_090 Hb_001268_160 Hb_001268_160 Hb_017439_010--Hb_001268_160 Hb_010889_010 Hb_010889_010 Hb_017439_010--Hb_010889_010 Hb_000328_010 Hb_000328_010 Hb_017439_010--Hb_000328_010 Hb_002498_030--Hb_000328_010 Hb_001102_160 Hb_001102_160 Hb_002498_030--Hb_001102_160 Hb_003408_010 Hb_003408_010 Hb_002498_030--Hb_003408_010 Hb_034726_010 Hb_034726_010 Hb_002498_030--Hb_034726_010 Hb_000011_310 Hb_000011_310 Hb_002498_030--Hb_000011_310 Hb_001401_040--Hb_003055_090 Hb_001408_170 Hb_001408_170 Hb_001401_040--Hb_001408_170 Hb_001401_040--Hb_003408_010 Hb_004650_030 Hb_004650_030 Hb_001401_040--Hb_004650_030 Hb_001401_040--Hb_001268_160 Hb_003728_110 Hb_003728_110 Hb_003055_090--Hb_003728_110 Hb_003055_090--Hb_010889_010 Hb_003992_280 Hb_003992_280 Hb_003055_090--Hb_003992_280 Hb_003055_090--Hb_001268_160 Hb_001268_160--Hb_001408_170 Hb_000008_200 Hb_000008_200 Hb_001268_160--Hb_000008_200 Hb_010381_040 Hb_010381_040 Hb_001268_160--Hb_010381_040 Hb_008053_030 Hb_008053_030 Hb_001268_160--Hb_008053_030 Hb_004117_090 Hb_004117_090 Hb_010889_010--Hb_004117_090 Hb_010381_100 Hb_010381_100 Hb_010889_010--Hb_010381_100 Hb_003813_090 Hb_003813_090 Hb_010889_010--Hb_003813_090 Hb_005496_040 Hb_005496_040 Hb_010889_010--Hb_005496_040 Hb_010889_010--Hb_003728_110 Hb_006153_160 Hb_006153_160 Hb_000328_010--Hb_006153_160 Hb_000193_340 Hb_000193_340 Hb_000328_010--Hb_000193_340 Hb_000086_210 Hb_000086_210 Hb_000328_010--Hb_000086_210 Hb_005144_120 Hb_005144_120 Hb_000328_010--Hb_005144_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.677021 1.63511 14.2299 20.1829 0.668763 0.452535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.69549 2.50088 1.14357 1.29976 5.95932

CAGE analysis